BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0076.p
         (222 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   418   e-118
gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   124   6e-30

>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  418 bits (1075), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/245 (86%), Positives = 213/245 (86%), Gaps = 30/245 (12%)

Query: 8   APGFVTLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSL 67
           APGFVTLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSL
Sbjct: 97  APGFVTLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSL 156

Query: 68  SAVLLQMAAAXT------------------------------EITAHFTSPPFSYQEAKA 97
           SAVLLQMAAA T                              EITAHFTSPPFSYQEAKA
Sbjct: 157 SAVLLQMAAAKTFGIENYAKLDPLTVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKA 216

Query: 98  PGITRVLNSTDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIF 157
           PGITRVLNSTDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIF
Sbjct: 217 PGITRVLNSTDVLGHITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIF 276

Query: 158 LRVSKLKLPQDEVEQMLADPGTEFTSTPVDIMQYVIFMGKAGTIKTKPAVWHEMFVPAFK 217
           LRVSKLKLPQ+EVEQMLADPGTEFTSTPVDIMQYV+FM KAGTIKTKPAVWHEMFVPAFK
Sbjct: 277 LRVSKLKLPQEEVEQMLADPGTEFTSTPVDIMQYVVFMSKAGTIKTKPAVWHEMFVPAFK 336

Query: 218 ERKGS 222
           ERKGS
Sbjct: 337 ERKGS 341


>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  124 bits (311), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 34/234 (14%)

Query: 11  FVTLWSKAHGIPRSEVVGLGALSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAV 70
            +T+W + +G  R  V G  +L   P +L +NNP VK++ DF+ KD+IA+P +  S+ + 
Sbjct: 101 LLTIWDRTYG--RQNVRGAASLGNFPYYLVSNNPKVKTIADFSDKDRIALPAVGVSVQSR 158

Query: 71  LLQMAAAX------------------------------TEITAHFTSPPFSYQE-AKAPG 99
           +LQ+A+A                               TEIT HF +PPF  QE A  P 
Sbjct: 159 VLQLASAKLWGDAQYNRLDKISIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPN 218

Query: 100 ITRVLNSTDVLGH-ITIDVVFALKSFTDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFL 158
              VL S DVLG   +  V++A + F   NPK  +AF+ A EE  ++I  N   AA+I+L
Sbjct: 219 AHIVLKSYDVLGGPSSATVLYATEKFRKDNPKTYRAFLDALEETASFIRANPDKAADIYL 278

Query: 159 RVSKLKLPQDEVEQMLADPGTEFTSTPVDIMQYVIFMGKAGTIKTKPAVWHEMF 212
           +V+K    +  + Q++ +P  +F   P +      FM + G IK KPA   + F
Sbjct: 279 KVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYF 332


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 670,085
Number of extensions: 24039
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 3
Length of query: 222
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,231,600
Effective search space: 172424000
Effective search space used: 172424000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)