BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0073.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311836|ref|YP_003775928.1| transmembrane protein [Herbaspi...   394   e-111

>gi|300311836|ref|YP_003775928.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/332 (61%), Positives = 242/332 (72%), Gaps = 5/332 (1%)

Query: 14  LIAALWALPAAAQSSSSSPPAPGQARQALSL-GSTPYTMAVYANADLNDLPSHVERAVII 72
           L  AL  L A    S+ + P      Q L+L G TPYT+ +YANADL+  P+ ++RAV+I
Sbjct: 27  LFMALTMLTAITARSADAAPVA----QPLTLPGPTPYTLTLYANADLSHPPAALQRAVVI 82

Query: 73  VHGVKRNAVDYFALGQHLLQQAALTSGNTLLLAPNFMARKDAGLLPGMPIWAGNGWMQGA 132
           VHG+KRNA DYFA+GQ LL  A L+   TLLLAP FM  +D+G    M +WAG+ WMQGA
Sbjct: 83  VHGIKRNADDYFAIGQRLLTAAQLSPATTLLLAPRFMTARDSGASAQMALWAGDAWMQGA 142

Query: 133 ASIRGVTGISSFAALDDLVRWLAEPRRFPDLREIVLIGHSAGAQLMQRYALLNPVAETLQ 192
           AS  GVTGI+SF ALDDL+RWLA+  RFP LREIVLIGHSAGAQLMQRYA+LN + E LQ
Sbjct: 143 ASKDGVTGITSFQALDDLLRWLADAGRFPALREIVLIGHSAGAQLMQRYAMLNSLDEALQ 202

Query: 193 SAGIQVRYIISSPSSYLYVSPERPQAGAFAVPAAASCPHYDHYRYGLVEPPAYLVQQHLD 252
              I +RY++SSPSSYLY SPERP    FA+P  A+CP YD YRYGL + P YL +Q LD
Sbjct: 203 QRNIHLRYVVSSPSSYLYASPERPDGNGFALPKTAACPDYDDYRYGLQQAPPYLARQELD 262

Query: 253 ARQLWARYAARDVRYLVGGRDVDPQHRFLDRSCGAALQGPTRLARQLAYRDYEQFLAGQW 312
             +L+ARYA RDVRY+VG  D DPQ RFLDRSC AALQG +R+ARQLAY  YEQFLA +W
Sbjct: 263 GPRLFARYAGRDVRYMVGQHDTDPQQRFLDRSCAAALQGASRVARQLAYVAYEQFLAQRW 322

Query: 313 QIPIHHPQQVIPDAAHGAPRLYRSPLAPGLIF 344
           Q P+ H Q++IP AAHGA RL+  P A G IF
Sbjct: 323 QRPVRHEQRLIPGAAHGAERLFGRPEAVGWIF 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,083,657
Number of extensions: 45661
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)