BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0072.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 622 e-179 gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 148 7e-37 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 115 4e-27 gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 112 4e-26 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 105 4e-24 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 622 bits (1603), Expect = e-179, Method: Compositional matrix adjust. Identities = 307/336 (91%), Positives = 317/336 (94%), Gaps = 4/336 (1%) Query: 1 MPSLALSQADTSATHSQRALRTAVARDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSS 60 M S LSQ DT AT QRALRT VARDVDEHAHNLTDWEQRYDQITCG+FEGVLQEWQS Sbjct: 1 MSSCLLSQPDTPATPIQRALRTTVARDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSD 60 Query: 61 GLQIFREASSRAVRQSCQVWPDAFWFGIEVRTSGMRINGRQVGEDVVMTRPGACEFELVT 120 GLQIFREASSRAVRQSCQVWPDA+WFGIE RT+GMRINGRQVGEDVVMTRPGACEFELVT Sbjct: 61 GLQIFREASSRAVRQSCQVWPDAYWFGIEARTTGMRINGRQVGEDVVMTRPGACEFELVT 120 Query: 121 PDAHEIYGIVVQRDALQSSAARLGCRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTL 180 PDAHEIYGIVVQRDALQ+SAARLGC+ DW+RLGQAELLKVDH GLE+CRQQIAALL + Sbjct: 121 PDAHEIYGIVVQRDALQASAARLGCQP--DWQRLGQAELLKVDHGGLEDCRQQIAALLAM 178 Query: 181 AGQASGAQAHAALQLRQEALLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQD 240 AGQASGA HAALQLRQEA+LVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQD Sbjct: 179 AGQASGA--HAALQLRQEAVLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQD 236 Query: 241 SPVTVPMLCEAVHVSRRTLQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIG 300 SPVTVPMLCEAVHVSRRTLQYCFEDVLG+SPMSYLRSLRLNGVRRALC GDG QAVGSIG Sbjct: 237 SPVTVPMLCEAVHVSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIG 296 Query: 301 DIAAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 336 DIAAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH Sbjct: 297 DIAAAWGFANFSQFSCDYKKLFGQTPSAMLQARTRH 332 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 148 bits (373), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 153/310 (49%), Gaps = 12/310 (3%) Query: 27 DVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAFWF 86 DVDE A LT WEQ Y Q+ G F+G L Q+ RE ++ A+ + P Sbjct: 15 DVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMVPPPGQMVI 74 Query: 87 GI-EVRTSGMRINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQSSAARLGC 145 GI G +NGR +G+D ++ G+ + T E+ GI +QRD S +L Sbjct: 75 GICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLFLS---QLHE 131 Query: 146 RDALDWKRLGQAELLKVDHQGLEECRQQIAALLTLAGQASGAQAHAALQLRQEALLVALL 205 +D ++ +L++D R + L A G H + +++ + Sbjct: 132 QDDASVRKWLDLSVLQLDPATAGMLRHYFSLAFDLLNTAQGKTVHPISPRALASTVISNV 191 Query: 206 AM---LDEGEIEAEAG-ASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVSRRTLQY 261 A+ L+ G + E+ S RR RIV +A ++ AH + + +C A HVSRRTLQY Sbjct: 192 ALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGILDVCRATHVSRRTLQY 251 Query: 262 CFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAV----GSIGDIAAAWGFANFSQFSCD 317 CFE+ L ISP+ YL++LRLN R + G +IG++AA GF + S+F+ + Sbjct: 252 CFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNLAALCGFNHPSRFASE 311 Query: 318 YKKLFGQTPS 327 YKK+FG PS Sbjct: 312 YKKMFGVLPS 321 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 146/313 (46%), Gaps = 15/313 (4%) Query: 26 RDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAFW 85 +DV EHA ++ W Y QI+ G E L + + +FRE ++ V Q + + Sbjct: 9 QDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQGEAPREQVC 68 Query: 86 FGIEVRTSGM-RINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQSSAARLG 144 F V G + GR+V E ++ G EF P +++ I R ++ Sbjct: 69 FAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALFEAQLEHTA 128 Query: 145 CRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTLAGQASGAQAHAALQLRQEALLVAL 204 + + L + ++KV Q L CR+++ + A S H ++ L ++L Sbjct: 129 SPERI--VALMKQPVVKVASQDLHACRERLLNIFYWA-MLSIEDGHGQHPQHEQELELSL 185 Query: 205 LAMLDEGEIEAEAGAS---FLRRRRIVNDAREFAMAHQDSPVTVPML---CEAVHVSRRT 258 LA L + GAS R IV+ M + + VP + CE + VSRRT Sbjct: 186 LAELLALLSAPDCGASRQISTIRSYIVDKLHRQTM---NDAINVPSIFEVCEQMQVSRRT 242 Query: 259 LQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIGDIAAAWGFANFSQFSCDY 318 +Q F+ V +P +YLR +RLNGVRRAL Q +IGDIA+ WGF + S F+ DY Sbjct: 243 VQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAEQI--TIGDIASRWGFFHLSHFAEDY 300 Query: 319 KKLFGQTPSAMLQ 331 + LF + PS ++ Sbjct: 301 RALFCELPSQTIR 313 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 112 bits (280), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 88/312 (28%), Positives = 141/312 (45%), Gaps = 14/312 (4%) Query: 26 RDVDEHAHNLTDWEQRYDQITCGAFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAFW 85 +DV HA + W+Q Y QI+ G E L + + FRE ++ V Q + D Sbjct: 9 QDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEAPRDQIC 68 Query: 86 FGIEVRTSGM-RINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQSSAARLG 144 F + G + GR+ + ++ G EF P ++ + RD + ++ Sbjct: 69 FAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEEHLHQMP 128 Query: 145 CRDALDWKRLGQAELLKVDHQGLEECRQQIAALLTLA------GQASGAQAHAALQLRQE 198 D + L + ++KV +GL CR+++ L + A G R++ Sbjct: 129 DPDRI--AALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQTLQREQ 186 Query: 199 ALLVALLAMLDEGEIEAEAGA---SFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVHVS 255 AL +LL L + R IV + + ++ +C+ + VS Sbjct: 187 ALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVCQRLQVS 246 Query: 256 RRTLQYCFEDVLGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIGDIAAAWGFANFSQFS 315 RRT+Q F+ V +P++YLR +RLNGVRR L +A SIGDIA+ WGF + S F+ Sbjct: 247 RRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEA--SIGDIASRWGFFHLSHFA 304 Query: 316 CDYKKLFGQTPS 327 DY+ LFG+ PS Sbjct: 305 EDYQALFGELPS 316 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 105 bits (263), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 96/304 (31%), Positives = 141/304 (46%), Gaps = 26/304 (8%) Query: 44 QITCGAFEGVLQEWQSSGLQIFREASSRAVRQSCQVWPDAFWFGIEVRTSGMR-INGRQV 102 Q++ G L Q +QI+RE S + + + WP + F V+ G ++GR V Sbjct: 44 QMSPGKLNYSLSMSQLGHIQIYRERSDKPLLKRGVNWPGSLVFSFVVQARGRGWLSGRAV 103 Query: 103 GEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQSSAARLGCRDALDWKRLGQAELLKV 162 + G E++TP ++ IVV R L + R+G D + G A L+ Sbjct: 104 DPQASLVADGEALPEIITPAELDLVFIVVDRQWL---SERIG--DGASRQIAGSARDLRC 158 Query: 163 D---HQGLEECRQQIAALLTLA--GQASGAQAHAALQLRQEA---------LLVALLAML 208 H+ R+ L A GQ S + H AL R A +L ALL +L Sbjct: 159 FAAWHEHALVLRRLFPLLPGQARLGQPSPSIGHCALAPRSSAGGGSLAEDMVLEALLDVL 218 Query: 209 DEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVH--VSRRTLQYCFEDV 266 G + +R+++ AR + D+P M A H VSRR LQ CF Sbjct: 219 --GSVHRVEALRETDHKRLIDQARR--LMRGDAPERATMTQVAAHLGVSRRHLQTCFNTS 274 Query: 267 LGISPMSYLRSLRLNGVRRALCEGDGSQAVGSIGDIAAAWGFANFSQFSCDYKKLFGQTP 326 +GI + ++R+ RLN VR+AL E + SIGDIAA WGF + S+F+ DY+ +FG+ P Sbjct: 275 VGIPAIEFVRAERLNQVRKALVEARRAGLEVSIGDIAADWGFWHLSRFAADYRDMFGELP 334 Query: 327 SAML 330 S L Sbjct: 335 SKTL 338 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.132 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 956,029 Number of extensions: 36491 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 6 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)