BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0065.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311141|ref|YP_003775233.1| histone acetyltransferase HPA2 ...   112   2e-26

>gi|300311141|ref|YP_003775233.1| histone acetyltransferase HPA2
           protein [Herbaspirillum seropedicae SmR1]
          Length = 165

 Score =  112 bits (279), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 7/162 (4%)

Query: 2   LVTALDPALHDLGRFDCGTPALNRYLRELVTQDIRRRVAACFVAVDDD--QRVAGYYTLA 59
            V  L+   H    FDC TPALN++LR    Q   + ++  FV   DD  Q + GYY LA
Sbjct: 5   FVAPLNKTQHQTEHFDCATPALNQWLRNTAGQHQDKGISRTFVLACDDTPQVIRGYYALA 64

Query: 60  SASM-PLAGLSDELRRKLPRYGAIPAIRVGRLAVDREFKGRGLGGALLVNALRRAVAA-- 116
              M   A L  E  ++LPR   +PA+ + RLA+ R  +GRGLG  LL +AL RA  A  
Sbjct: 65  IRQMIATATLPIEFSKRLPR--EVPALTLARLAICRTLQGRGLGEFLLYDALWRAKEASN 122

Query: 117 EIPGAVLVVDAKDPQASAFYRYHGFISLQDAPLTLFLPLASV 158
           ++ GA+L VDAK+ QA++FY  +GF  + ++PLTL + L+ +
Sbjct: 123 QVGGALLFVDAKEAQAASFYAQYGFKPMPESPLTLAIALSKI 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.142    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 460,915
Number of extensions: 15874
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)