BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0063.p
         (98 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311827|ref|YP_003775919.1| sugar permease of the major fac...   171   7e-45
gi|300310790|ref|YP_003774882.1| major facilitator superfamily p...   144   2e-36
gi|300310160|ref|YP_003774252.1| major facilitator superfamily p...    99   9e-23
gi|300309575|ref|YP_003773667.1| proline/betaine transporter pro...    90   4e-20
gi|300312423|ref|YP_003776515.1| proline/betaine transporter pro...    85   1e-18

>gi|300311827|ref|YP_003775919.1| sugar permease of the major
          facilitator superfamily protein [Herbaspirillum
          seropedicae SmR1]
          Length = 428

 Score =  171 bits (434), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 85/91 (93%)

Query: 1  MTTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG 60
          MTTST+SQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG
Sbjct: 1  MTTSTASQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFG 60

Query: 61 AGFLMRPLGAIILGAYVDRVGRRSNFKCSIC 91
          AGFLMRPLGAIILGAYVDRVGRR     ++ 
Sbjct: 61 AGFLMRPLGAIILGAYVDRVGRRQGLIVTLA 91


>gi|300310790|ref|YP_003774882.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score =  144 bits (362), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 77/90 (85%)

Query: 2  TTSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGA 61
          TT+ +  SK STVLRVTSGNF+EMFDFFL+GFYA++ISK FFPSDNEF SL+LTF TFGA
Sbjct: 4  TTTNAKHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTFGA 63

Query: 62 GFLMRPLGAIILGAYVDRVGRRSNFKCSIC 91
          GFLMRPLGAIILG+Y+DRVGRR     ++ 
Sbjct: 64 GFLMRPLGAIILGSYIDRVGRRQGLIVTLA 93


>gi|300310160|ref|YP_003774252.1| major facilitator superfamily
          permease [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score = 98.6 bits (244), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 60/80 (75%)

Query: 5  TSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGAGFL 64
          T  +++   V+  T GN +E++DF +FG +A  ISK FFPS +E+A+LM TFMTF AGF+
Sbjct: 8  TDPKTQRRAVIAATLGNVLEIYDFIIFGIFAVAISKTFFPSGDEYAALMFTFMTFAAGFV 67

Query: 65 MRPLGAIILGAYVDRVGRRS 84
          +RP+GA++LG Y D+VGR+ 
Sbjct: 68 VRPIGALVLGQYADKVGRKK 87


>gi|300309575|ref|YP_003773667.1| proline/betaine transporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score = 89.7 bits (221), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 59/96 (61%)

Query: 3   TSTSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGAG 62
            S S+Q +   ++    GN +E FDF ++ F+A  I+K FFP+ N+  SL+L   TFG G
Sbjct: 12  VSVSNQQRRRAIVATVIGNGLEWFDFTVYSFFAVIIAKLFFPTGNDLTSLLLAVATFGVG 71

Query: 63  FLMRPLGAIILGAYVDRVGRRSNFKCSICYSYISST 98
           F MRP+G I+LG Y DRVGR++    +I    + +T
Sbjct: 72  FFMRPVGGILLGIYADRVGRKAALSVTILLMAVGTT 107


>gi|300312423|ref|YP_003776515.1| proline/betaine transporter
          protein [Herbaspirillum seropedicae SmR1]
          Length = 427

 Score = 84.7 bits (208), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 5  TSSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNEFASLMLTFMTFGAGFL 64
          T  Q++   ++  + GN +E FD  ++G +A  I+K FFP+ ++  SL+LTF TFG  F 
Sbjct: 13 THPQAR-RAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLLLTFATFGVSFF 71

Query: 65 MRPLGAIILGAYVDRVGRRSNFKCSI 90
          MRPLGA++LGAY DR GR++    SI
Sbjct: 72 MRPLGAVVLGAYSDRAGRKAALMLSI 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 196,348
Number of extensions: 5892
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 9
Length of query: 98
Length of database: 1,619,870
Length adjustment: 67
Effective length of query: 31
Effective length of database: 1,302,625
Effective search space: 40381375
Effective search space used: 40381375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 123 (52.0 bits)