BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0060.p
         (76 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311823|ref|YP_003775915.1| nitric oxide dioxygenase [Herba...   116   4e-28

>gi|300311823|ref|YP_003775915.1| nitric oxide dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 397

 Score =  116 bits (290), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 61/73 (83%)

Query: 4   CYERARAGDPAPYATGFIDTALLQQWLPQTRDVDAYFVGPKPFMKAIKRALGALGVPAAQ 63
           CYE+ R GD AP+ATG I+ +LLQQWLP   D+DAYFVGPK FMKAIKR L  LGVPAAQ
Sbjct: 325 CYEQPRQGDAAPHATGLIERSLLQQWLPGNPDLDAYFVGPKSFMKAIKRQLAELGVPAAQ 384

Query: 64  SRYEFFGPAAALE 76
           SRYEFFGPAA+L+
Sbjct: 385 SRYEFFGPAASLD 397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 270,935
Number of extensions: 9539
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 76
Length of database: 1,619,870
Length adjustment: 47
Effective length of query: 29
Effective length of database: 1,397,325
Effective search space: 40522425
Effective search space used: 40522425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)