BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0054.p
         (510 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirill...   917   0.0  

>gi|300311819|ref|YP_003775911.1| glycogen synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 529

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/489 (90%), Positives = 463/489 (94%), Gaps = 4/489 (0%)

Query: 1   VITALAVSLRKVGIDASILMPAYPEAVRNLGDTVQIGLKHGLPGGAGRILRGTIPGTDVP 60
           VITALAVSLRK GIDASIL+PAYPEAVRNLG T QIGLKHGLPGGAGR+LRG IPGTDVP
Sbjct: 24  VITALAVSLRKAGIDASILLPAYPEAVRNLGHTEQIGLKHGLPGGAGRLLRGIIPGTDVP 83

Query: 61  ALLLDTARFRQRGANPYVDTDGVEFSDNALCFADLSHAAVAICAGETSLPVPHVVHANDW 120
           ALLLDTARFRQRGANPY+DTDGVEFSDNA+CFADLSHAAVAICAGETSL  PHVVHANDW
Sbjct: 84  ALLLDTARFRQRGANPYLDTDGVEFSDNAVCFADLSHAAVAICAGETSLSAPHVVHANDW 143

Query: 121 HAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSF 180
           HAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSF
Sbjct: 144 HAGLIPCLLKLRGLDHIGTMLTIHNLAFQGNFALESAEQIGIPQHLLTGDGVEYWGKLSF 203

Query: 181 LKAGIRFSDCVSTVSKNYAEEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDP 240
           LKAGIRFSDCVSTVS+NYA EIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDP
Sbjct: 204 LKAGIRFSDCVSTVSRNYAHEIMTPRFGCGMDGILSFRKLDLRAIPNAIDAELWNPADDP 263

Query: 241 LIARNFSIGNMKGKAACKRDLQKLFGLPVDPFAPVMGLGSRISHQKMADVVIEALPGIME 300
           LIARNFS+GNMKGKAACKRDLQKLFGLPVDPFAPVMG+GSR+SHQKMADVVIEALPGIME
Sbjct: 264 LIARNFSVGNMKGKAACKRDLQKLFGLPVDPFAPVMGMGSRLSHQKMADVVIEALPGIME 323

Query: 301 RHPRLQVVILGCGDHDYEAAFLDLAERYRGRIAVHIGYDERRAHALHAGSDMLLHPTRFE 360
           RHPR+Q+V+LGCGDHDYE + L LA+RY GRIAVHIGYDERRAHALHAGSDMLLHPTRFE
Sbjct: 324 RHPRMQMVVLGCGDHDYEKSLLALAQRYAGRIAVHIGYDERRAHALHAGSDMLLHPTRFE 383

Query: 361 PFGLTPLYAMRYGAIPIGSRVGGLVDTVCDADRDPQRATGVLFEGESAADMQHAVARAFA 420
           PFGLTPLYAMRYGAIPIGSRVGGLVDTVCDAD D +RATGVLF+G+ A+DM+ AV RAFA
Sbjct: 384 PFGLTPLYAMRYGAIPIGSRVGGLVDTVCDADLDAERATGVLFDGDRASDMEAAVDRAFA 443

Query: 421 LYNDTERWQSVQRNAMSIDCDWAGPTRAYIDAYAHVADMAVRPLFAPRPLSVERPAIQAH 480
           LY D ERWQS+QRNAMSIDCDWAGPTRAYIDAYAHVADMAVRPLFAPRP  VERPA+Q  
Sbjct: 444 LYADNERWQSMQRNAMSIDCDWAGPTRAYIDAYAHVADMAVRPLFAPRPQPVERPAVQH- 502

Query: 481 AHPERMVSP 489
              ERMV P
Sbjct: 503 ---ERMVRP 508


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,702,828
Number of extensions: 79788
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 421
Effective length of database: 1,198,455
Effective search space: 504549555
Effective search space used: 504549555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)