BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0049.p
         (409 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311815|ref|YP_003775907.1| 4-alpha-glucanotransferase [Her...   613   e-176

>gi|300311815|ref|YP_003775907.1| 4-alpha-glucanotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 751

 Score =  613 bits (1580), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/408 (76%), Positives = 351/408 (86%)

Query: 1   LFEAYSHHLSSQGVAGCCDWRQWGEAGRHPDTPEMQAFAAEHAGEIDFHLFLQWQAARQL 60
           L+EAYS+ L  QG  G CDWRQWG A +HPDTP M  FAA+HAGEI+FHLFLQWQA RQL
Sbjct: 343 LYEAYSNWLCQQGAPGYCDWRQWGAAAQHPDTPAMSNFAADHAGEIEFHLFLQWQATRQL 402

Query: 61  AEAQHSARVAGMAIGLIADLAVGADNGGSQAWSHQDEIAAGLTVGAPPDRLAPQGQNWGL 120
           A AQ  AR +GM IGLIADLAVGADNGGSQAWSHQ EIAAGLTVGAPPDRLAP GQNWGL
Sbjct: 403 AHAQQCARASGMPIGLIADLAVGADNGGSQAWSHQGEIAAGLTVGAPPDRLAPLGQNWGL 462

Query: 121 GAFSPLALRRTGYRAYLSMLRATFAQGGGVRIDHVLGLNRLWLVPQGREADAGAYVSFPQ 180
           GAFSPLALRRTGY+AYL+MLRA  AQGGGVRIDHVLGLNRLWLVPQG  A AGAYV++PQ
Sbjct: 463 GAFSPLALRRTGYQAYLAMLRACMAQGGGVRIDHVLGLNRLWLVPQGLGAQAGAYVAYPQ 522

Query: 181 QDMLRLIALESWRYRTIVIGEDLGTVPPGFDTVLDEAGVSGIRVLWFQREKTSFLPPSDW 240
           QDMLRLIALESWR+R +VIGEDLGTVPPGFD  L E+GV+GIRVLWFQR+K  FLPP++W
Sbjct: 523 QDMLRLIALESWRHRAVVIGEDLGTVPPGFDRDLAESGVAGIRVLWFQRDKEGFLPPAEW 582

Query: 241 SRQAIAVTTTHDLPTVAGWWSGADLAWRERLGQLEEGLPAAREQRRDDRSQLWQGLVQQG 300
           S QAI VTTTHDLPTVAGWW+GAD+AWR RLGQLEEG  AA  QR  +R QLWQ LV+QG
Sbjct: 583 SAQAIGVTTTHDLPTVAGWWTGADIAWRHRLGQLEEGRAAAEAQRAKERDQLWQALVEQG 642

Query: 301 CASGPLPEVAPAAKEGDEESALPVALDDCAMVVDAALDYVAATPASLAVVPVEDILGLTQ 360
            ASGP+P+++ A  E   + ALP   ++CA+ VDAAL++VAATPA LAVVPVEDILGL Q
Sbjct: 643 WASGPVPQISAAEAEDLAQQALPPVPEECAIAVDAALEFVAATPAPLAVVPVEDILGLVQ 702

Query: 361 QPNLPGMTEPHPNWRRRLPEDTPQLFSAYAAKARLERLRRVRGGTAKE 408
           QPNLPG+T+PHPNWRRRLP+DTPQLF++YAA+ARLERLRRVRG T KE
Sbjct: 703 QPNLPGLTDPHPNWRRRLPDDTPQLFASYAARARLERLRRVRGYTPKE 750


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,573,772
Number of extensions: 76962
Number of successful extensions: 212
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,207,925
Effective search space: 388951850
Effective search space used: 388951850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)