BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0043.p (154 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311809|ref|YP_003775901.1| two component response regulato... 247 2e-67 gi|300311884|ref|YP_003775976.1| two component response regulato... 69 3e-13 gi|300309955|ref|YP_003774047.1| two-component system sensor his... 57 5e-10 gi|300312680|ref|YP_003776772.1| two component response regulato... 56 1e-09 gi|300311949|ref|YP_003776041.1| two component response regulato... 55 2e-09 >gi|300311809|ref|YP_003775901.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 247 bits (631), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/146 (83%), Positives = 130/146 (89%) Query: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGELGRTDLQQ 60 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGF RLRDGQEALD+ F + RT+LQQ Sbjct: 1 MATEQSVNIILVEDDDGHAVLVEKNLRRAGLVNGFVRLRDGQEALDYLFDPQRSRTELQQ 60 Query: 61 VVVLLDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGCNVYITKPV 120 +VVLLDVNMPRVNGVEVLRR+K D +AIPVIMLTTTDDPREI CYE GCNVYITKPV Sbjct: 61 LVVLLDVNMPRVNGVEVLRRLKADPVLSAIPVIMLTTTDDPREIGRCYEYGCNVYITKPV 120 Query: 121 EYDDFIEAVRRLGFFLQVVKLPPSGA 146 EY+DFIEA+RRLGFFLQVVKLP A Sbjct: 121 EYEDFIEAIRRLGFFLQVVKLPGLAA 146 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 68.6 bits (166), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 1/139 (0%) Query: 5 QSVNIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGELG-RTDLQQVVV 63 + +IILV+D A L L L + D + A + FF GE R DL ++ Sbjct: 4 EQYDIILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLI 63 Query: 64 LLDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGCNVYITKPVEYD 123 LLD+N+P ++G + L+ +K +AAT+ IPV+M +++DD R+I YE+G N Y+ K + Sbjct: 64 LLDLNLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPK 123 Query: 124 DFIEAVRRLGFFLQVVKLP 142 +F+ V G + + P Sbjct: 124 EFMGTVVDTGIYWRNRNRP 142 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 57.4 bits (137), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 8 NIILVEDDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGELGRTDLQQVVVLLDV 67 NI++V+D + L+ AG + DG++AL H G + +V+ D+ Sbjct: 4 NILIVDDSFSLRQTISAALKSAGY--HVEEAADGKQALAHLDGRKFN-------LVISDL 54 Query: 68 NMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGCNVYITKPVEYDDFIE 127 NMP ++G+ +R MKQ A PVIMLTT G ++ KP + ++ Sbjct: 55 NMPHLDGLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLD 114 Query: 128 AVRRL 132 AV +L Sbjct: 115 AVAKL 119 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 17/128 (13%) Query: 7 VNIILVEDDDGHAVLVEKNLRRAGLVNGF--QRLRDGQEALDHFFGGELGRTDLQQVVVL 64 +N++LVEDD ++ L R +GF + +G +AL F V++ Sbjct: 1 MNVLLVEDDP----VLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNA---------AVLV 47 Query: 65 LDVNMPRVNGVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGCNVYITKPVEYDD 124 LD+ +P ++G EVLRRM+ AA PV++LT D + H E+G + Y+ KP + Sbjct: 48 LDIGLPGIDGFEVLRRMR--AAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPE 105 Query: 125 FIEAVRRL 132 + ++ L Sbjct: 106 LVARIKAL 113 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 25/128 (19%) Query: 14 DDDGHAVLVEKNLRRAGLVNGFQRLRDGQEALDHFFGGELGRTDLQQVVVLLDVNMPRVN 73 DD GH VLV +G L E LDH DL +LLD MP ++ Sbjct: 29 DDSGHIVLVA--------TDGLSAL----ERLDHI------TPDL----ILLDAMMPGID 66 Query: 74 GVEVLRRMKQDAATAAIPVIMLTTTDDPREIAHCYEVGCNVYITKPVEYDDFIEAVRRLG 133 G E RR+KQ A +PV+ +T + + +EVG Y+TKP+ E V R+G Sbjct: 67 GFETCRRIKQVRRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQ---EVVARIG 123 Query: 134 FFLQVVKL 141 ++ ++ Sbjct: 124 AHIRTARM 131 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 436,063 Number of extensions: 15717 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 8 Length of query: 154 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 77 Effective length of database: 1,255,275 Effective search space: 96656175 Effective search space used: 96656175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)