BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0041.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311807|ref|YP_003775899.1| light-regulated signal transduc...   668   0.0  

>gi|300311807|ref|YP_003775899.1| light-regulated signal
           transduction histidine kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 732

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/402 (83%), Positives = 365/402 (90%)

Query: 1   MSNPYHASRRRPVDLSNCDQEPIHIPGSIQNHGALLCFTPEGKLATRSANAAALLGDLPE 60
           MSNPYH  R R VDLSNCD EPIHIPGSIQNHGALLCF P+G LA+RSANA+ LLG LPE
Sbjct: 1   MSNPYHEGRHRTVDLSNCDSEPIHIPGSIQNHGALLCFAPDGALASRSANASTLLGALPE 60

Query: 61  VGQPLDEAHLNAAARAVIQAALEDRHGYVDSRMITLASGAFDLVTHKSEGVLIAEFEQRP 120
           VGQ L EAHL+A+ARAVIQAALEDR+GYVD+RM+ L +G FDLVTHKSEGVLIAEFE+RP
Sbjct: 61  VGQALGEAHLDASARAVIQAALEDRYGYVDARMLVLPAGVFDLVTHKSEGVLIAEFERRP 120

Query: 121 ADAVSLESFALAAHQAIQRIQRQPGVEDLLTLAVDEIARITGFDRVMAYRFLHDDSGEVI 180
           AD  +L+SFALAAHQAIQRIQRQ  V DLL+LAVDEIARITGFDRVMAYRFLHDDSGEV+
Sbjct: 121 ADVAALDSFALAAHQAIQRIQRQQSVADLLSLAVDEIARITGFDRVMAYRFLHDDSGEVV 180

Query: 181 AEHKREDLEPFLGQRYPASDIPAQARRLYVINPIRLIADVTASTVALEPDHNPLTGRPLD 240
           AEH+REDLE FLGQRYPASDIPAQARRLYVINPIRLIADV A TV L+PD NPLTGR LD
Sbjct: 181 AEHRREDLESFLGQRYPASDIPAQARRLYVINPIRLIADVGAPTVPLQPDLNPLTGRALD 240

Query: 241 LSHSMLRSVSPVHIEYLSNMGVGASMSLSIVIGERLWGLIACHHMSAHLVPHSVRMSCQL 300
           LSH +LRSVSPVHIEYLSNMGVGASMSLSIVIGERLWGLIACHHMS HLVPH+VRMSCQL
Sbjct: 241 LSHGILRSVSPVHIEYLSNMGVGASMSLSIVIGERLWGLIACHHMSPHLVPHAVRMSCQL 300

Query: 301 LSQFVSALVERNLNGERARALEYSADLRRKIVAQVTDREDIVLALAADHEGFLRLMNAHG 360
           LSQFVSALVERNLNGERARAL+ S  LRR+IVAQVTDRED+VLAL++  E FLRLMNAHG
Sbjct: 301 LSQFVSALVERNLNGERARALDDSTALRREIVAQVTDREDLVLALSSAPESFLRLMNAHG 360

Query: 361 GAISMERKTQVFGKAPSREGVNALINWLNENEPGDFFSTSAL 402
           GAI+++RKTQVFGKAPSREGVNALINWLNE+   D FSTS+L
Sbjct: 361 GAITLDRKTQVFGKAPSREGVNALINWLNEHHSADLFSTSSL 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,212,385
Number of extensions: 49704
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)