BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0038.p (1035 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311805|ref|YP_003775897.1| two component hybrid sensor his... 1632 0.0 gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine... 338 1e-93 gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine... 288 2e-78 gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine k... 283 5e-77 gi|300313027|ref|YP_003777119.1| two component transmembrane sen... 136 1e-32 >gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 1632 bits (4227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 804/979 (82%), Positives = 879/979 (89%), Gaps = 17/979 (1%) Query: 1 MLYNDAFAACIGTAHPAAFGARLSESALWRG----AARICEAAIGAAFKGQQQQLGRVSL 56 MLYNDAFAAC+G+AHPAA GA L+ A W G +A ++A+ A+ G QQ ++L Sbjct: 73 MLYNDAFAACLGSAHPAALGAPLTTIAGWPGTDAESAGRLQSAVLASLAGAPQQAECLAL 132 Query: 57 F--PDAAAAAGTPDQWDLTCVPVWEDAADDQPAQV--AGVLCTLVRSTGLDAALAHTDML 112 P AA A +WDL+CVP+WE D+PAQ +GVLCT +R++G+ AL HTD+L Sbjct: 133 LAPPQAATA-----RWDLSCVPLWEL---DEPAQAQASGVLCTFLRASGVQTALLHTDLL 184 Query: 113 RDLMEQSPSFKAVVRGPQHVFERVNGAYFKLFGDRPVLGLPAREALPELLDENLYELLDR 172 DLMEQSPSFKAVVRGP+HVFERVN AYFKLFGDRPV+G PAR ALPELLDENL+ LLDR Sbjct: 185 SDLMEQSPSFKAVVRGPEHVFERVNSAYFKLFGDRPVIGQPARMALPELLDENLFMLLDR 244 Query: 173 VYQTGQTYTERGARLFLRRAHETGFEGAVLDFVFQPIKGVDGQVAGIFIEGNDVTERFVA 232 VYQTGQ YTERGARLFLRR ++ F+GAVLDFVFQPIK +G+V GIFIEGNDVTER +A Sbjct: 245 VYQTGQAYTERGARLFLRRGVDSHFDGAVLDFVFQPIKNAEGKVDGIFIEGNDVTERMLA 304 Query: 233 EERLRIVDRAGGIGIFEWFPVSGKLAVSDRFRRLWGLPAEGEVTSQQLVNMIDEEFHPNL 292 EERLRIVDRAG IGIFEWFP SG+L+VSDRFRRLWGLP EGEVT+ QLV MIDE+FHPNL Sbjct: 305 EERLRIVDRAGEIGIFEWFPDSGRLSVSDRFRRLWGLPPEGEVTAAQLVGMIDEQFHPNL 364 Query: 293 GTSRIKEGGPRNPLEYTEYHITRPDGEQRWLARKGEVVQDDPRAGSRYVGVVFDVTSRKL 352 GT+RIKEGG RNPLEYTEYHITRPDG+QRWLARKGEVVQDDPR GSRYVGV FDVT+RKL Sbjct: 365 GTARIKEGGSRNPLEYTEYHITRPDGQQRWLARKGEVVQDDPRTGSRYVGVAFDVTARKL 424 Query: 353 MEQALAASEASVRANNAFVRQLLDSTDQGFFSIDREGIVTLCNAAFLKLLGYAGEKDVLG 412 MEQALAASEASVRANNAFVRQLLDSTDQGFFSID GI+TLCNAAFL+LLGYA EKDVLG Sbjct: 425 MEQALAASEASVRANNAFVRQLLDSTDQGFFSIDSAGIITLCNAAFLQLLGYAAEKDVLG 484 Query: 413 RSIHEVILTSADDGSGARGECAVLKAARDGVTTHVESEDFLRVDGSSFPVQYQAHPVWQD 472 R IH+VIL +++ + +R CAVL+AAR+GV+ HV+SE+FLRVDG+SFPVQYQ HPVWQD Sbjct: 485 RPIHDVILQPSEE-TQSRTGCAVLRAAREGVSAHVDSENFLRVDGTSFPVQYQTHPVWQD 543 Query: 473 GELQGALCTFIDLTERRRGMQALSWSENRLTAIFNQASVCFSELDLEGRYLRVNQALCRM 532 G+LQGALCTF+DLTERRRG+QALSWSENRL AIFNQASVCFSELDL+GRYLRVNQALCRM Sbjct: 544 GQLQGALCTFVDLTERRRGLQALSWSENRLRAIFNQASVCFSELDLQGRYLRVNQALCRM 603 Query: 533 LGRTEAEMLQMTLADVTHPDDVPMNMTLFKRCIADGSSFTLEKRYLRPDGSAFWVSSDIS 592 LGR+E EML MTLADVTHPDDVPMNM+LF RCI DG SFTLEKRYLRPDGS FWVSSDIS Sbjct: 604 LGRSEEEMLGMTLADVTHPDDVPMNMSLFNRCIEDGRSFTLEKRYLRPDGSTFWVSSDIS 663 Query: 593 RIVDGEGRPQAMIAVSTDITERRRAEDALRELNDTLEQRVVEEILERSRAEAALRQMQKM 652 RIVDGEGRPQAMIAVSTDITERRRAE+ALRELNDTLEQRVVEEILERSRAEAALRQMQKM Sbjct: 664 RIVDGEGRPQAMIAVSTDITERRRAEEALRELNDTLEQRVVEEILERSRAEAALRQMQKM 723 Query: 653 EAVGQLTGGVAHDFNNVLQIIGGNLQLLQTDPRLDDRSRQRVRIAIGAVDRGAKLSSQLL 712 EAVGQLTGGVAHDFNNVLQIIGGNLQLLQ+DPRLD+RSRQRVRIAIGAVDRGAKLSSQLL Sbjct: 724 EAVGQLTGGVAHDFNNVLQIIGGNLQLLQSDPRLDERSRQRVRIAIGAVDRGAKLSSQLL 783 Query: 713 AFARRQPLQPRSINLERVVLNMDDLLRRAVGENIEISTVITHDLWNTMLDPNQVENLIIN 772 AFARRQPLQPRSINLERVV NMDDLLRRAVGENI+IST + HDLWNTMLDPNQVENLIIN Sbjct: 784 AFARRQPLQPRSINLERVVQNMDDLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIIN 843 Query: 773 TAINSRDAMPNGGRLTLQIDNVQLSDPAFLSQADLPPGDYVELQISDNGAGMSPEVRERA 832 TAIN+RDAMP+GGRLT+QIDNV+L DP FLSQADL PG+YVELQISDNGAGMSPEVR+RA Sbjct: 844 TAINARDAMPSGGRLTVQIDNVRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRA 903 Query: 833 FEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEAGKGTTIRIYFPRCIDQEVVIDD 892 FEPFFTTK EGEGTGLGLSMAYGFVKQSKGHIS+HSE GKGTTIRIYFPRC+D+EV ID+ Sbjct: 904 FEPFFTTKLEGEGTGLGLSMAYGFVKQSKGHISIHSEQGKGTTIRIYFPRCLDEEVRIDE 963 Query: 893 NRDMEVRGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERALAILQSGIPVDLMF 952 RD+ V GGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERAL ILQSG+ +DL+F Sbjct: 964 VRDLTVHGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVF 1023 Query: 953 TDVVMPGSVPVTELXGGGR 971 TDVVMPGSVPVTEL R Sbjct: 1024 TDVVMPGSVPVTELAQQAR 1042 >gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine kinase response regulator protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 338 bits (868), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 205/518 (39%), Positives = 292/518 (56%), Gaps = 21/518 (4%) Query: 474 ELQGALCTFIDLTERRRGMQALSWSENRLTAIFNQASVCFSEL-DLEGRYLRVNQALCRM 532 E++ F D+T RRR AL + R+ ++ + + DL V+ Sbjct: 117 EMRQVSVLFRDVTARRRTEAALRENVERVQLALEAGAIIGTWIWDLPSDRFSVDDGFAAA 176 Query: 533 LGRTEAEMLQMTLAD----VTHPDDVPMNMTLFKRCIADGSSFTLEKRYLRPDGSAFWVS 588 G L D HPDD + + +A G ++ + R R DG +W+ Sbjct: 177 FGIPAERGLDGIKLDELMLSVHPDDRELLSARIREALARGGAYAHQYRTRRRDGRYYWLE 236 Query: 589 SDISRIVDGEGRPQAMIAVSTDI-------TERRRAEDALRELNDTLEQRVVEEILERSR 641 ++ + +G P V DI ER RA ALR LN+TLEQRV E Sbjct: 237 ANGRVEMTPDGIPSKFPGVLIDIEGRRAVEAERDRALAALRTLNETLEQRVEERTAALLN 296 Query: 642 AEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQT---DPRLDDRSRQRVRIAI 698 AE ALRQ QKMEAVGQLTGG+AHDFNN+L I G+L+L++ R+ D R + A Sbjct: 297 AEEALRQAQKMEAVGQLTGGLAHDFNNILAGISGSLELMKVRLAQGRIGDIERH-LNGAQ 355 Query: 699 GAVDRGAKLSSQLLAFARRQPLQPRSINLERVVLNMDDLLRRAVGENIEISTVITHDLWN 758 AV R A L+ +LLAF+RRQ L P+ +L R+V M +L+ R+VG I + T+ LW+ Sbjct: 356 SAVKRAAALTQRLLAFSRRQTLDPKPADLNRIVAGMHELIGRSVGPAIAVETIAAGGLWH 415 Query: 759 TMLDPNQVENLIINTAINSRDAMPNGGRLTLQIDNVQLSDPAFLSQADLPPGDYVELQIS 818 T +D Q+EN ++N IN+RDAMP+GGRLT++ N L D L Q +PPG YV L +S Sbjct: 416 TFVDIGQMENALLNLCINARDAMPHGGRLTIETANRWLDDIGAL-QRGVPPGQYVSLSVS 474 Query: 819 DNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEAGKGTTIRI 878 D GAGMSPEV RAF+PFFTTK G+GTGLGLSM YGF QS G + ++SE G+G + I Sbjct: 475 DTGAGMSPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFAGQSGGTVRIYSELGQGAMVCI 534 Query: 879 YFPRCIDQ----EVVIDDNRDMEVRGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKADN 934 Y PR + + ++ + + + G +TILVV+D+P +++ ++ L LGY VL+A++ Sbjct: 535 YLPRHVGEGGVDDLALPEESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGYSVLEAED 594 Query: 935 GERALAILQSGIPVDLMFTDVVMPGSVPVTELXGGGRA 972 G AL ++++ +DL+ TDV +P + +L RA Sbjct: 595 GPSALRVVEACQEIDLLLTDVGLPNGMNGRQLADAIRA 632 >gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 552 Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 178/449 (39%), Positives = 247/449 (55%), Gaps = 44/449 (9%) Query: 525 VNQALCRMLGRTEAEMLQMTLADVTHPDDVPMNMTLFKRCIADGSSFTLEKRYLRPDGSA 584 VN A M G + AE++ + P+ + +R +A+ E R +GS Sbjct: 71 VNNAFINMTGYSSAEVVGKNCRFLQGPETDRSVVAEVRRAVAERREIATELLNYRKNGST 130 Query: 585 FWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEDALRELNDTLEQRVVEEILERSRAEA 644 FW + IS + D +G + + DI+ RR AE AL Sbjct: 131 FWNALFISPVYDQQGNLKYFFSSQLDISRRRDAEQALG---------------------- 168 Query: 645 ALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQTDPRLDD-------RSRQRVRIA 697 Q +KMEA+GQLTGG+AHDFNN+LQ+I G L ++ R D RS +R A Sbjct: 169 ---QARKMEALGQLTGGIAHDFNNLLQVITGYLDMINLALRSDKPDLARVARSADSIRKA 225 Query: 698 IGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVLNMDDLLRRAVGENIEISTVITHDLW 757 G + A L+ QLLAFAR+Q L+ R+INL + DL+ R +G +I + T + LW Sbjct: 226 SG---KAAMLTQQLLAFARKQRLEGRTINLNSLTEGFTDLVSRTLGGDITVQTELARGLW 282 Query: 758 NTMLDPNQVENLIINTAINSRDAMPNGGRLTLQIDNVQLSDPAFLSQADLPPGDYVELQI 817 N LDP Q+E ++N IN+RDAM GR+ ++ N L+DP Q L G YV + + Sbjct: 283 NCRLDPTQMEVALLNVLINARDAMNGRGRVRIRTANEDLADPDRAVQLGLKEGLYVSIAV 342 Query: 818 SDNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEAGKGTTIR 877 +D+G G++P++ R +PFFTTK EG+GTGLGLSM YGFVKQS G + + S A GTT+ Sbjct: 343 TDDGPGIAPDILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRITSGAEGGTTVT 402 Query: 878 IYFPRCIDQ-----EVVIDDNRDMEVRGGDETILVVEDDPNLQLTVIDTLSSLGYRVLKA 932 IYFP DQ E DNR + +GG E ILVV+D + L SLGYRV Sbjct: 403 IYFPATQDQVGGGFEY---DNRS-QSQGGQEHILVVDDRLEVAELAQTMLESLGYRVSMV 458 Query: 933 DNGERALAILQSGIPVDLMFTDVVMPGSV 961 ++ AL +++SG PVDL+FTD++MPGS+ Sbjct: 459 NSPAEALQLIRSGRPVDLLFTDLIMPGSM 487 >gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 845 Score = 283 bits (724), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 160/366 (43%), Positives = 228/366 (62%), Gaps = 15/366 (4%) Query: 617 AEDALRELNDTLEQRVVEEILERSRAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGN 676 +E LR +N++LE V E E ALR QK+EA+GQLTGG+AHDFNN+L I G+ Sbjct: 430 SEARLRAINESLEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGS 489 Query: 677 LQLLQTDPRL----DDRSRQRVRIAIGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVL 732 L L++ RL + + V +A + R A L+ +LLAFARRQ L P+ + ++ Sbjct: 490 LDLMRV--RLVQGRGEELLRYVELAARSTQRAASLTQRLLAFARRQTLAPKPTRVNALIS 547 Query: 733 NMDDLLRRAVGENIEISTVITHDLWNTMLDPNQVENLIINTAINSRDAMPNGGRLTLQID 792 M++L+RR +G I + V LW T +D Q+E+ ++N IN+RDAMP GGRLT++ Sbjct: 548 GMEELIRRTIGPAIVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETA 607 Query: 793 NVQLSDPAFLSQADLPPGDYVELQISDNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSM 852 N L D + + DLPPG YV + ++D+G GM P+V RAF+PFFTTK G GTGLGLSM Sbjct: 608 NKWLDD-RWAHERDLPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSM 666 Query: 853 AYGFVKQSKGHISLHSEAGKGTTIRIYFPRC------IDQEVVIDDNRDMEVRGGDETIL 906 YGF +QS G + L+SE G+GTT+ IY PR D+ +D+ + G E +L Sbjct: 667 VYGFARQSGGQVRLYSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGD--GNGEVVL 724 Query: 907 VVEDDPNLQLTVIDTLSSLGYRVLKADNGERALAILQSGIPVDLMFTDVVMPGSVPVTEL 966 VV+D+ ++++ V + LS GY VL+A++G AL ILQS +DL+ TDV +PG + ++ Sbjct: 725 VVDDEASIRMLVAEILSDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQV 784 Query: 967 XGGGRA 972 GRA Sbjct: 785 ADAGRA 790 >gi|300313027|ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 454 Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 121/404 (29%), Positives = 183/404 (45%), Gaps = 32/404 (7%) Query: 521 RYLRVNQALCRMLGRTEAEMLQ--MTLADVTHPDDVPMNMTLFKRCIADGSSFTLEKRYL 578 R V++ R+LG EML + HPDD + + E R+ Sbjct: 56 RLTFVSENASRVLGYEPCEMLDDPNFWFNHIHPDDTAQIFSSLAMLFVEDQKI-YEYRFR 114 Query: 579 RPDGSAFWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEDALRELNDTLEQRVVEEILE 638 +GS W+ + I D +G PQ +I + TDIT R+ ED L+ + EQR + E L+ Sbjct: 115 TSNGSYLWMHDTLRLIRDPDGTPQEVIGLMTDITGRKEMEDTLQRQAE--EQRKLIEQLK 172 Query: 639 RSRAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQTDPRLDDRSRQRVRIAI 698 A+A L Q +K+ ++GQL GVAH+ NN + + NL L Q + Sbjct: 173 M--AQAQLMQSEKLASIGQLAAGVAHEINNPIGFVSANLNTLGNYVATLLEGIQLHQCLQ 230 Query: 699 GAVDRGAKLSSQLLAFARRQPLQPRSINLERVVLNMDDLLRRA--VGENIEISTVITHDL 756 G A QL +F R L S ++ ++ ++ L+R + ++++ + I Sbjct: 231 GGALPAAMAQEQLRSFEARADLAFLSEDVTELLAESNEGLQRVRNIVQSLKDFSRIGESN 290 Query: 757 WNTMLDPNQVENLIINTAINSRD----------AMP---------NGGRLTLQIDNVQ-L 796 W M D ++ + +N A N +P N + L ++ Q + Sbjct: 291 WQ-MTDLHRGLDSTLNIANNELKYKVSIVKQYGELPLVKCLASELNQVFMNLLVNAAQAI 349 Query: 797 SDPAFLSQADLPPGDYVELQISDNGAGMSPEVRERAFEPFFTTKREGEGTGLGLSMAYGF 856 S+ ++ GD V + ISD G G++PE R FEPFFTTK G GTGLGLS++YG Sbjct: 350 SERGTVTICTARAGDKVSVSISDTGHGIAPENLNRIFEPFFTTKPVGSGTGLGLSLSYGI 409 Query: 857 VKQSKGHISLHSEAGKGTTIRIYFPRCIDQEVVIDDNRDMEVRG 900 VK+ G I + S G GTT I P ID V+ + E G Sbjct: 410 VKKHGGDIRVSSAPGCGTTFTIELP--IDPASVLAQSSATETSG 451 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,133,613 Number of extensions: 131907 Number of successful extensions: 635 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 613 Number of HSP's successfully gapped: 25 Length of query: 1035 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 940 Effective length of database: 1,170,045 Effective search space: 1099842300 Effective search space used: 1099842300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)