BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0037.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311805|ref|YP_003775897.1| two component hybrid sensor his...   214   2e-57
gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine...    57   7e-10
gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine...    54   5e-09

>gi|300311805|ref|YP_003775897.1| two component hybrid sensor
            histidine kinase/response regulator protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1278

 Score =  214 bits (546), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/181 (69%), Positives = 138/181 (76%), Gaps = 14/181 (7%)

Query: 1    MTRERDQANASADASAMLHVLPVGGSHRQAGGQ-DAHFDQAGSAGGVVMA------PEAE 53
            +TRERDQA ASA     +HVLP   + R+   Q D    +A  AGG   A      P  E
Sbjct: 1103 VTRERDQAAASA----TIHVLP--RTEREPVAQADPLVREAHGAGGASAAQPLPDYPRPE 1156

Query: 54   SVADSASGLRLLVVEDNIDSQQLVCELLETLGHQARGVISAEDAQQALGEQSFDVLFTDV 113
               D A GLRLLVVEDNIDSQQLVCELLETLGHQARGVIS E+A QAL EQ FDVLFTDV
Sbjct: 1157 PQED-AGGLRLLVVEDNIDSQQLVCELLETLGHQARGVISGEEALQALEEQGFDVLFTDV 1215

Query: 114  NLPGMSGVDLARSALERFPEMAVIFASGYGAMVARNVGFASHALPKPYDIDQLQEILKKI 173
            NLPGMSGV+LA++AL RFP++AVIFASGYG MVARNVGFA+HALPKPYDIDQLQEIL KI
Sbjct: 1216 NLPGMSGVELAKAALGRFPDLAVIFASGYGTMVARNVGFAAHALPKPYDIDQLQEILDKI 1275

Query: 174  A 174
            A
Sbjct: 1276 A 1276


>gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 552

 Score = 57.0 bits (136), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 4/114 (3%)

Query: 64  LLVVEDNIDSQQLVCELLETLGHQARGVISAEDAQQALGE-QSFDVLFTDVNLPG-MSGV 121
           +LVV+D ++  +L   +LE+LG++   V S  +A Q +   +  D+LFTD+ +PG M+GV
Sbjct: 431 ILVVDDRLEVAELAQTMLESLGYRVSMVNSPAEALQLIRSGRPVDLLFTDLIMPGSMNGV 490

Query: 122 DLARSALERFPEMAVIFASGYGAMVARNVGFASH--ALPKPYDIDQLQEILKKI 173
            LAR A    P + V+  +GY +      G       L KPY  D+L   ++ +
Sbjct: 491 VLAREAKRMLPTIKVLLTTGYASESLERHGADGEFPVLDKPYRHDELARKIRIV 544


>gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine
           kinase response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 688

 Score = 54.3 bits (129), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 11/132 (8%)

Query: 50  PEAESVADSASGLRLLVVEDNIDSQQLVCELLETLGHQARGVISAEDAQQAL----GEQS 105
           PE   V  +     +LVV+D    + +  E+L  LG+    V+ AED   AL      Q 
Sbjct: 551 PEESHVPAAPGSKTILVVDDEPLVRMVTVEVLRDLGYS---VLEAEDGPSALRVVEACQE 607

Query: 106 FDVLFTDVNLP-GMSGVDLARSALERFPEMAVIFASGYGAMVARNVGFASHA---LPKPY 161
            D+L TDV LP GM+G  LA +     P++ V+F +GY      N G        L KP+
Sbjct: 608 IDLLLTDVGLPNGMNGRQLADAIRAPRPDLPVLFVTGYAENAVLNHGHLERGMQVLTKPF 667

Query: 162 DIDQLQEILKKI 173
             D L   +K++
Sbjct: 668 AADVLARRVKEL 679


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 558,935
Number of extensions: 22722
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 4
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)