BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0028.p (1050 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 2010 0.0 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1070 0.0 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 1040 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 399 e-112 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 385 e-108 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 2010 bits (5208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1007/1047 (96%), Positives = 1039/1047 (99%) Query: 1 VSVSAAFIKRPIGTTLLAIAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 +SVSAAFIKRPIGTTLLAIAILLVG+AVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 ANLPNPPTFRKINPADSPIMIMSVQSDALPLTVVNDYADNILAQQISQISGVGLVSVNGQ 180 ANLPNPPTFRKINPADSPIMIMSVQS+ALPLTVVNDYADNILAQQISQISGVGLV+VNGQ Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 QKPAVRIQVDPAKIATLGISLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 QKPAVRIQVDPAK+ATLG+SLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 WNDMVLAWRNGAPIRVKDIGIAIDGPENNKIAAWAFAGAANTADHTISNGRSIVLAITKQ 300 WNDMVLAWRNGAPIRVKDIGIA+DGPENNKIAAWAFAGAANTADH+I+NGRSIVLAITKQ Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGRSIVLAITKQ 300 Query: 301 PGANVIETVGRIKAAMPRLRAAIPAAINVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV 360 PGANVIETVGRIKAAMPRLRAAIPAAI+VNTLIDRTQTIRASVEDVEFTLVLTIALVVMV Sbjct: 301 PGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVMV 360 Query: 361 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE 420 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE Sbjct: 361 IFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLE 420 Query: 421 NIYRYVEEGMSPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480 NIYRYVEEGM+PLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT Sbjct: 421 NIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVT 480 Query: 481 LTIAVSVIISLTLTPMLCSRFLKNEHGRQHGKLYQWFERCFDAMLNGYKRGLDVVMKHQF 540 LTIAVSVIISLTLTPMLCSRFLKNEHG++HGKLYQWFERCFDAML GYKRGLDVVMKHQF Sbjct: 481 LTIAVSVIISLTLTPMLCSRFLKNEHGQRHGKLYQWFERCFDAMLAGYKRGLDVVMKHQF 540 Query: 541 ITLMSFIATVALTVVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMQERLLKVAEVVR 600 ITLMSFIAT+ALT VLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAM ERLLKVAEVVR Sbjct: 541 ITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMHERLLKVAEVVR 600 Query: 601 KDPDVIGFAMSAGSTTFNTGQFFIALKPKDEGRTTNADEVIARLRPQVAKVQGVNLFMQA 660 +DPDVIGFAMSAGSTTFNTGQFFIALKPKD+GRTTNADE+IARLRP+VA+++GVNLFMQA Sbjct: 601 QDPDVIGFAMSAGSTTFNTGQFFIALKPKDQGRTTNADEIIARLRPKVARIEGVNLFMQA 660 Query: 661 SQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLDRFRQLPQLTDVASDQQNQAAAAVI 720 SQDINVGGRLSRTQYQYTITDTDLDELNVWAPRML+RFRQLPQLTDVASDQQNQAAAAVI Sbjct: 661 SQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTDVASDQQNQAAAAVI 720 Query: 721 TIDRAHASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPQLQKDPALFDKL 780 TIDRA ASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTP LQKDPALFDKL Sbjct: 721 TIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPALQKDPALFDKL 780 Query: 781 YLTSPLTGQQVPLSTFVKVDTTKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDIIQKT 840 YLTSPLTGQQVPLSTFVK+DT+KTSYLSISHQSQFPAVTISFNLAKGVSLGEAVD+IQKT Sbjct: 781 YLTSPLTGQQVPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKT 840 Query: 841 KDEMGVPQTLVGNFQGTAKAFGDSLASQPYLIAAALIAVYIVLGLLYESYIHPLTILSTL 900 KD+MGVPQTLVGNFQGTAKAFGDSL+SQPYLIAAALIAVYIVLGLLYESYIHPLTILSTL Sbjct: 841 KDQMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTL 900 Query: 901 PSAGVGALLILMIGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERTQGLKPEEAIY 960 PSAGVGALLILM GGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAER+QG+KPE+AIY Sbjct: 901 PSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIY 960 Query: 961 QACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVV 1020 QACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGL+LSQALTLFTTPVV Sbjct: 961 QACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVV 1020 Query: 1021 YLYLDRAHYWYERKKKARQERKAARLA 1047 YLYLDRAHYWY RKK+ARQ RKAARLA Sbjct: 1021 YLYLDRAHYWYMRKKEARQARKAARLA 1047 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/1045 (53%), Positives = 754/1045 (72%), Gaps = 24/1045 (2%) Query: 4 SAAFIKRPIGTTLLAIAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMASNV 63 S FI RP+ T+LL +AILLVGI + LLP++ LP+VD+PTIQV PG SP+ M S+V Sbjct: 4 SRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMTSSV 63 Query: 64 AQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLPANL 123 PLERQF + GL QM+S S+ G++ ITLQF+L+ ++D A +VQAAINA + LP++L Sbjct: 64 TAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLPSDL 123 Query: 124 PNPPTFRKINPADSPIMIMSVQSDALPLTVVNDYADNILAQQISQISGVGLVSVNGQQKP 183 P PP + K+NPAD+PI+ ++V S+ +PL V D D +AQ+ISQ+SGVGLVS++G Q+P Sbjct: 124 PMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGGQRP 183 Query: 184 AVRIQVDPAKIATLGISLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQWND 243 AVR+Q++P +A LG++L+D+R I VNQ KG+ DG +A T+ NDQL A+++ + Sbjct: 184 AVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADEYRN 243 Query: 244 MVLAWRNGAPIRVKDIGIAIDGPENNKIAAWAFAGAANTADHTISNGRSIVLAITKQPGA 303 +++A++NGAPIRV D+ +DG EN ++ AWA NT I N I +QPGA Sbjct: 244 LIIAYKNGAPIRVSDVADVVDGAENVRLGAWA-----NTQPAVIVN-------IQRQPGA 291 Query: 304 NVIETVGRIKAAMPRLRAAIPAAINVNTLIDRTQTIRASVEDVEFTLVLTIALVVMVIFV 363 NVI V IK +P+L+A++P AI+V+ L DRT TIRASV+DV+F L+L++ALVVMVIFV Sbjct: 292 NVIAVVDSIKKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFV 351 Query: 364 FLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVMLENIY 423 FLRNV AT+IPSV VPL+++GT +MY+ G+S++NL+LMALTIA GFVVDDAIVM+ENI Sbjct: 352 FLRNVPATIIPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENIS 411 Query: 424 RYVEEGMSPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTVTLTI 483 RY+EEGM P++AALKGA +IGFTIIS++ SL+AV IPLL MG +VGRLF EFAVT+ ++I Sbjct: 412 RYIEEGMKPMQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSI 471 Query: 484 AVSVIISLTLTPMLCSRFLKNEHGRQHGKLYQWFERCFDAMLNGYKRGLDVVMKHQFITL 543 +S ++SLTLTPM+C+R L+++ Q G Y ++ FD ++ Y L V+ Q +TL Sbjct: 472 LISAVVSLTLTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIARYGVMLQWVLARQKLTL 531 Query: 544 MSFIATVALTVVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMQERLLKVAEVVRKDP 603 + AT+ LTV+L++F+PKGFFP QD GVI G +E+ Q S +AM E+ ++A+VV +DP Sbjct: 532 LVAAATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQDP 591 Query: 604 DVIGFAMSAG----STTFNTGQFFIALKPKDEGRTTNADEVIARLRPQV-AKVQGVNLFM 658 V G + T N+G+ I LKP D R +A +VI RL+ ++ A+V G+ L+M Sbjct: 592 AVESLTSFIGVDGTNATLNSGRMLINLKPHDV-REVSATDVIRRLQGKLAAEVPGITLYM 650 Query: 659 QASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLDRFRQLPQLTDVASDQQNQAAAA 718 Q QD+ + +SRTQYQ+T+ D D L+ W P+++ R +Q +L DVA++ Q+Q A Sbjct: 651 QPVQDLTIEDSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQA 710 Query: 719 VITIDRAHASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEVTPQLQKDPALFD 778 I IDR AS GI+ + ID +Y+A GQR ++ +TQ N YRV++EV P+ Q PA D Sbjct: 711 YIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALD 770 Query: 779 KLYLTSPLTGQQVPLSTFVKVDTTKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDIIQ 838 +YL + G +VPLS+ V T +T+ L ++H QFPA T+SFNLAKG SLGEAV I+ Sbjct: 771 SIYLVTS-GGGKVPLSSIATV-TERTAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIK 828 Query: 839 KTKDEMGVPQTLVGNFQGTAKAFGDSLASQPYLIAAALIAVYIVLGLLYESYIHPLTILS 898 ++E+G+P + V NFQG A AF SL++ +LI AA++ +YIVLG+LYESYIHP+TILS Sbjct: 829 AAEEEIGMPASTVTNFQGAALAFQASLSNTLWLILAAIVTMYIVLGVLYESYIHPITILS 888 Query: 899 TLPSAGVGALLILMIGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERTQGLKPEEA 958 TLPSAGVGALL LMI G DL +I +IGIILLIGIVKKN IMMIDFAL AER +G P EA Sbjct: 889 TLPSAGVGALLSLMISGTDLGIIGIIGIILLIGIVKKNAIMMIDFALEAERHEGKSPREA 948 Query: 959 IYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTP 1018 IYQACLLRFRPI+MTTM ALL LPLMLG G GSELR+PLG MVGGL++SQ LTLFTTP Sbjct: 949 IYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTP 1008 Query: 1019 VVYLYLDRAHYWYERKKKARQERKA 1043 V+YL D R+ +AR ++A Sbjct: 1009 VIYLGFDS----LGRRLRARFGQRA 1029 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/1098 (48%), Positives = 750/1098 (68%), Gaps = 74/1098 (6%) Query: 1 VSVSAAFIKRPIGTTLLAIAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 +++S FI+RPI TTLL I I L GI + LLPV+PLPQVD+PTI ++A +PG SPETMA Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 + VA PLER IAG+++MTS S+ ST+ITLQFDL+R+ID AA DVQAA+NA+ LP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 ANLPNPPTFRKINPADSPIMIMSVQSDALPLTVVNDYADNILAQQISQISGVGLVSVNGQ 180 +P+ PT+RK+NPAD+PI+I+++ SD + + D AD+I+AQ++SQ+ GVG VSV G Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 QKPAVRIQVDPAKIATLGISLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 +PAVRI+++P + GI D+R +A T N+PKG ++ + + +Y NDQ A + Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 WNDMVLAWRNGAPIRVKDIGIAIDGPENNKIAAWAFAGAANTADHTISNGR-SIVLAITK 299 + +++++RNG P+RV+D+ D A+ + SNG+ S+++ I + Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDS-------------VADVRNAGSSNGKPSVLIIINR 287 Query: 300 QPGANVIETVGRIKAAMPRLRAAIPAAINVNTLIDRTQTIRASVEDVEFTLVLTIALVVM 359 QPGAN+I+TV ++ +P+L+A+IP+AI++ ++DRT TIRAS+++ EFTL+L++ALV+M Sbjct: 288 QPGANIIDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIM 347 Query: 360 VIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVML 419 V+F+FLRN ATLIP+V VP++++GT GVMY+ G+SLDNLSLMALTIA GFVVDDAIV+L Sbjct: 348 VVFLFLRNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVL 407 Query: 420 ENIYRYVEEGMSPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTV 479 ENI R++E GM P +AAL GA E+GFT++S+S+SL+AVFIP+L+M GIVGRLFREFA+T+ Sbjct: 408 ENISRHIESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITL 467 Query: 480 TLTIAVSVIISLTLTPMLCSRFLK-----NEHGRQHGKLYQWFERC-------FDAMLNG 527 ++ I VS+++SLT TPM+C++ L+ +E RQ + + W ++ F+ ML Sbjct: 468 SVAILVSLVVSLTTTPMMCAQLLRHDPAADEARRQ--RRHPWLQKIADQSAAIFEDMLLA 525 Query: 528 YKRGLDVVMKHQFITLMSFIATVALTVVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAA 587 Y+R L ++ + ++ +AT+AL V L+ IPKGFFPQQD G +VG Q S A Sbjct: 526 YQRTLAWALRAAPLMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQA 585 Query: 588 MQERLLKVAEVVRKDP---DVIGFAMSAGSTTFNTGQFFIALKPKDEGRTTNADEVIARL 644 M+ +L + ++VR DP DV+ F G N G ++ LKP E R +AD+V+ARL Sbjct: 586 MRTKLNEFIDIVRADPAVSDVVAFT---GGQRRNGGFMYVTLKPLSE-RKDSADKVVARL 641 Query: 645 RPQVAKVQGVNLFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLDRFRQLPQL 704 R + AKV G +F+ QDI +G R S +QY+Y++ D+ L +W P++ L +L Sbjct: 642 RIKTAKVAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKEL 701 Query: 705 TDVASDQQNQAAAAVITIDRAHASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVIL 764 D+++DQQ+ +TIDR A G++P LID+T+ D GQRQ++ ++ +N Y V++ Sbjct: 702 EDISTDQQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVM 761 Query: 765 EVTPQLQKDPALFDKLYLT-------SPLTG----------------------------- 788 E PQ + P Y++ SP T Sbjct: 762 EAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPS 821 Query: 789 QQVPLSTFVKVDTTKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDIIQKTKDEMGVPQ 848 +Q+PL+ F + + T TS LS+SH+ QF A T+SFNLA+GVSL +A I + ++GVP Sbjct: 822 RQIPLAAFSRFEPTTTS-LSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPT 880 Query: 849 TLVGNFQGTAKAFGDSLASQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGAL 908 ++G F GTA AF S +SQP LI AL+AVYIVLG+LYES IHP+TI+STLPSAGVGAL Sbjct: 881 NVLGTFAGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGAL 940 Query: 909 LILMIGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERTQGLKPEEAIYQACLLRFR 968 L LM+ G D S+IALIG+ILLIGIVKKN IMM+DFA+ AER +G+ P +AI++AC LRFR Sbjct: 941 LALMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFR 1000 Query: 969 PIMMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAH 1028 PIMMTTM ALL +PL +GHG G+ELR+PLG ++VGGLV+SQ LTL+TTPVVYLY++R Sbjct: 1001 PIMMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLS 1060 Query: 1029 YWYERK--KKARQERKAA 1044 W +R+ +K + E AA Sbjct: 1061 SWSKRRFGRKNKTETSAA 1078 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 305/1063 (28%), Positives = 526/1063 (49%), Gaps = 55/1063 (5%) Query: 7 FIKRPIGTTLLAIAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMASNVAQP 66 FI RP+ +LAI I+L G LPV+ P + PTI VTA PG + +T+ +V Sbjct: 5 FIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSL 64 Query: 67 LERQFSLIAGLSQMTSQSTL-GSTQITLQFDLNRNIDAAALDVQAAINASTGQLPANLPN 125 +E++ + GL + SQS G QIT+ F N D AA+DVQ + +LPA + Sbjct: 65 IEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPAAVTQ 124 Query: 126 PPTFRKINPADSPIMI---MSVQSDALPLTVVNDYADNILAQQISQISGVGLVSVNGQQK 182 ++ + S ++ +S L + DY + +I ++ GVG + G ++ Sbjct: 125 QGV--QVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTER 182 Query: 183 PAVRIQVDPAKIATLGISLEDIRGVIATTTVNQPKGTVD-----GARQ-AFTVYTNDQLL 236 A+RI +DP K+ L ++ D+ I GT+ G +Q A TV N QL Sbjct: 183 -AMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLT 241 Query: 237 KAEQWNDMVL-AWRNGAPIRVKDIGIAIDGPENNKIAAWAFAGAANTADHTISNGRSIVL 295 EQ+ +++L A NGA +R++D+ A G + + S + Sbjct: 242 SPEQFGNIILRANANGATVRLRDV------------ARVEVGGQSYDTSGRLDGKPSSFI 289 Query: 296 AITKQPGANVIETVGRIKAAMPRLRAAIPAAINVNTLIDRTQTIRASVEDVEFTLVLTIA 355 + P AN + T + M L P + D ++ ++ S+E+V TL+ I Sbjct: 290 GVQLSPTANALGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIV 349 Query: 356 LVVMVIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDA 415 LV +V+F+FL+N+ T+IP++ VP+A++GT + + G+S++ L++ + +A+G +VDDA Sbjct: 350 LVFLVMFLFLQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDA 409 Query: 416 IVMLENIYRYV-EEGMSPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFRE 474 IV++EN+ R + EEG+SP +A K G+I +I I++ L+AVFIP+ GG VG ++R+ Sbjct: 410 IVVVENVERIMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQ 469 Query: 475 FAVTVTLTIAVSVIISLTLTPMLCSRFLKN-EHGRQHGK--LYQWFERCFDAMLNGYKRG 531 F++++ ++ SV+++ TLTP LC+ LK E G H K + WF R F++ +GY+ Sbjct: 470 FSLSMVASMVFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGI 529 Query: 532 LDVVMKHQFITLMSFIATVALTVVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMQER 591 + ++ ++ ++ VA +L++ +P F P +D G I+ + S++ Sbjct: 530 IGGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAV 589 Query: 592 LLKVAEVVRKDP------DVIGFAMSAGSTTFNTGQFFIALKP-KDEGRTTNADEVIARL 644 + ++ E KDP V+G++ S N F LK ++ +AD + + Sbjct: 590 VKQIEEYYLKDPAVEHAIAVLGYSFSGNGQ--NAALVFTPLKDWSQRDKSQSADAIAGKA 647 Query: 645 RPQVAKVQGVNLFMQASQDI----NVGGRLSRTQYQYTITDTDLDELNVWAPRMLDRFRQ 700 ++++ +F I N G R Q + + T L + ++L Q Sbjct: 648 FGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQAR---NQILGMASQ 704 Query: 701 LPQLTDVASDQQNQAAAAVITIDRAHASSFGISPSLIDATIYDAIGQRQVAQYFTQINSY 760 L V + A + IDR A++ G+ S I++ + A+G V + Sbjct: 705 SKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQ 764 Query: 761 RVILEVTPQLQKDPALFDKLYLTSPLTGQQVPLSTFVKVDTTKTSYLSISHQSQFPAVTI 820 RVI++ + + P LY + +G VP S FV I + +PA+ I Sbjct: 765 RVIVQADAKRRLQPEDLTNLYARNS-SGTMVPFSAFVTAKWINGPVQLIRYNG-YPAMKI 822 Query: 821 SFNLAKGVSLGEAVDIIQKTKDEMGVPQTLVGNFQGTAKAFGDSLASQ--PYLIAAALIA 878 + A G S GEA+ ++ ++ P F+ T ++ + + P L A +LIA Sbjct: 823 AGGAAPGRSTGEAMAEMESFVAKL--PPGF--GFEWTGQSLEEKTSGNQAPALYALSLIA 878 Query: 879 VYIVLGLLYESYIHPLTILSTLPSAGVGALLILMIGGYDLSVIALIGIILLIGIVKKNGI 938 V++VL LYES PL ++ +P +GALL + + V +G+I ++G+ KN I Sbjct: 879 VFLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAI 938 Query: 939 MMIDFALTAERTQGLKPEEAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELRRPL 998 ++I+FA + QG EA +A LRFRPI+MT++ +L LPL + GAGS +R + Sbjct: 939 LIIEFAKDLQ-AQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAI 997 Query: 999 GYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWYERKKKARQER 1041 G ++GG++ + L +F P+ ++ + + ER++K E Sbjct: 998 GTGVMGGMITATVLAVFLVPIFFVVVRKIFKGSERQRKFDAEH 1040 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 385 bits (990), Expect = e-108, Method: Compositional matrix adjust. Identities = 304/1077 (28%), Positives = 539/1077 (50%), Gaps = 75/1077 (6%) Query: 7 FIKRPIGTTLLAIAILLVGIAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMASNVAQP 66 FI RPI ++AI I+L G+ L + P + P + + A G S +T+ +V Q Sbjct: 5 FIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQV 64 Query: 67 LERQFSLIAGLSQMTSQSTLGSTQ-ITLQFDLNRNIDAAALDVQAAINASTGQLPANLPN 125 +E+Q + L M++ S+ + ++L F N D A + VQ + T +LP + N Sbjct: 65 IEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQN 124 Query: 126 PPTFRKINPADSPI-MIMSVQSDALPLTVVN--DYADNILAQQISQISGVGLVSVNGQQK 182 + A + I M++S+ SD +T ++ D+ + L QIS++ GVG V+ G Sbjct: 125 NGV--TVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGTNY 182 Query: 183 PAVRIQVDPAKIATLGISLEDIRGVIATTTVNQPKGTVD------GARQAFTVYTNDQLL 236 A+RI +DPAK+ + DI + G + G + T+ +L Sbjct: 183 -AMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLT 241 Query: 237 KAEQWNDMVLAWR-NGAPIRVKDIGIAIDGPENNKIAAWAFAGAANTADHTISNGR-SIV 294 +++ ++++ +G+ +++ D+ G E+ ++A+ NG+ S Sbjct: 242 TPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQ-------------QNGKPSSA 288 Query: 295 LAITKQPGANVIETVGRIKAAMPRLRAAIPAAINVNTLI--DRTQTIRASVEDVEFTLVL 352 LAI GAN + T +K + L PA++ + T I D T +R S+E+V TL+ Sbjct: 289 LAIQLATGANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIE 348 Query: 353 TIALVVMVIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVV 412 I LVV+++++FL+N+ AT IP++TVP+ ++GT G++ + GYS++ L++ + +A+G +V Sbjct: 349 AIVLVVLIMYLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLV 408 Query: 413 DDAIVMLENIYRYV-EEGMSPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRL 471 DDAIV++EN+ R + EE +SP EA K EI ++ I++ L AVFIP+ GG G + Sbjct: 409 DDAIVVVENVERLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVI 468 Query: 472 FREFAVTVTLTIAVSVIISLTLTPMLCSRFLKNEHGR--QHGKLYQWFERCFDAMLNGYK 529 +R+F++T+ +A+SV+++LTLTP LC+ LK G Q G+ + WF R FD Y+ Sbjct: 469 YRQFSITIVSAMALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQ 528 Query: 530 RGLDVVMKHQFITLMSFIATVALTVVLFIFIPKGFFPQQDNGVIVG-----FAESAQDTS 584 G+ ++K L+ + VLF+ +P F P++D GV++ +A+ T+ Sbjct: 529 GGVAGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTA 588 Query: 585 S--AAMQERLLKVAEVVRKDPDVIGFAMSAGSTTFNTGQFFIALKPKDE--GRTTNADEV 640 + +QE + E V ++G + G + N + FI LK ++ G +A E+ Sbjct: 589 TVVKTVQEYFMNKPESVESVLAIVGAGV--GGNSQNGARAFIRLKDWEQRTGAGQSASEL 646 Query: 641 IARLRPQVAKVQGVNLFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRML----D 696 + R ++K++G +F+ + R Q + D +L ++ L D Sbjct: 647 VRRANADLSKIRGARVFLMNPPAV-------RGLGQSSGFDLELKDVGGVGHDALLQARD 699 Query: 697 RFRQLPQ----LTDVASDQQNQAAAAVITIDRAHASSFGISPSLIDATIYDAIGQRQVAQ 752 +F QL + L +V + + + ID A + I+ S I+AT+ A+G V Sbjct: 700 QFLQLARSNALLANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVND 759 Query: 753 YFTQINSYRVILEVTPQLQKDPALFDKLYLTSPLTGQQVPLSTFVKVDTTKTSYLSISHQ 812 + + +V ++ + ++ Y+ + + Q VP + F+ T L + Sbjct: 760 FLSNGRVKKVYVQGDSAFRMQADDLNRWYVRNAAS-QMVPFAAFMSSQWTYGPSL-LERY 817 Query: 813 SQFPAVTISFNLAKGVSLGEAVDIIQKTKDEMGVPQTLVG-NFQGTAKAFGDSLASQ--P 869 + + I A GVS G A+ ++K V Q G F+ T ++ + L+ P Sbjct: 818 NGVSSFEIVGEPAAGVSSGTAMAEVEKL-----VAQLPAGIGFEWTGSSYQERLSGNQAP 872 Query: 870 YLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLILMIGGYDLSVIALIGIILL 929 L A +++ V++ L LYES+ P ++ +P +G +L+ I G V +G++ Sbjct: 873 MLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTT 932 Query: 930 IGIVKKNGIMMIDFALTAERTQGLKPEEAIYQACLLRFRPIMMTTMCALLSGLPLMLGHG 989 +G+ KN I++++FA + G EA +A LR RPI+MT++ + LPL + G Sbjct: 933 VGLSAKNAILIVEFAKQLHES-GKSLWEATLEAVQLRLRPILMTSLAFMFGVLPLAVASG 991 Query: 990 AGSELRRPLGYAMVGGLVLSQALTLFTTPVVYLYLDRAHYWYERK--KKARQERKAA 1044 AGS RR +G ++GG++ + L +F P+ Y YL A W +R+ +K RQ+ A Sbjct: 992 AGSASRRAIGTGVLGGMLSATLLGIFFVPLFY-YLIGA--WLDRRAARKPRQDDDHA 1045 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,791,780 Number of extensions: 110006 Number of successful extensions: 534 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 444 Number of HSP's successfully gapped: 11 Length of query: 1050 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 955 Effective length of database: 1,170,045 Effective search space: 1117392975 Effective search space used: 1117392975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)