BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0024.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310601|ref|YP_003774693.1| citrate synthase [Herbaspirillu...   262   1e-71
gi|300312419|ref|YP_003776511.1| methylcitrate synthase [Herbasp...   108   5e-25
gi|300312274|ref|YP_003776366.1| citrate synthase [Herbaspirillu...    85   5e-18

>gi|300310601|ref|YP_003774693.1| citrate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 431

 Score =  262 bits (670), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/217 (63%), Positives = 161/217 (74%), Gaps = 1/217 (0%)

Query: 4   LVRRLAACLLGTAPSTAPLHQQCASAWGLDAAGAQLVRRALVLCADHELNASGFTARCIA 63
           LVR LAACLL T P T+P+H QCA AWG+  AG +L+R ALVLCADHELNAS FT+RC+A
Sbjct: 177 LVRILAACLLRTRPDTSPIHVQCARAWGVGRAGGELIRMALVLCADHELNASSFTSRCVA 236

Query: 64  STGANLQAAVIGGLAALSGPLHGGTTARVEALLETLDEQDDPAASLRQRLARGEELPGFG 123
           ST A+L+A VI GLA LSG  HG TT RVEAL + L  +D     +R+RL+RG++LPGFG
Sbjct: 237 STDASLRAVVIAGLAGLSGGRHGATTGRVEALWDELGTRD-VDRKMRERLSRGDDLPGFG 295

Query: 124 HHLYPQGDVRASALLAPLLPVHPRWQQTIEVVRELTGHPPSVDFALAAVRRHLHLPPGSA 183
           H LYP GD RAS LL+ +LP H  W   I+    LTG  PSVDFAL A+RRHL LP G+A
Sbjct: 296 HTLYPDGDPRASYLLSQILPRHSPWAAMIDAGITLTGQKPSVDFALVALRRHLRLPVGAA 355

Query: 184 FGLFALGRSLGWIAHALEQGRGGSLIRPRAAYVGVRP 220
           FGLFALGRS+GWIAH LEQ     LIRPRA Y+G +P
Sbjct: 356 FGLFALGRSIGWIAHGLEQREQHHLIRPRAVYIGPQP 392


>gi|300312419|ref|YP_003776511.1| methylcitrate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  108 bits (269), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 17/196 (8%)

Query: 35  AGAQLVRRALVLCADHELNASGFTARCIASTGANLQAAVIGGLAALSGPLHGGTTARVEA 94
           A  + +  +L+L A+HE NAS FT R IA TG+++ +A+ G + AL GP HGG       
Sbjct: 180 AWEKAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFE 239

Query: 95  LLETLDEQDDPAASLRQRLARGEELPGFGHHLYPQGDVRASALL------------APLL 142
           + +  D  D+  A +R+R+   E + GFGH +Y   D R   +               + 
Sbjct: 240 IQKRYDNPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVARKLSKEAGSTKMF 299

Query: 143 PVHPRWQQTIEVVRELTGHPPSVDFALAAVRRHLHLPPGSAFG-LFALGRSLGWIAHALE 201
            +  R +  +  ++++    P++D+  +AV  H+   P + F  LF + R+ GW AH +E
Sbjct: 300 DIAERLETVMWDIKKMF---PNLDW-FSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIE 355

Query: 202 QGRGGSLIRPRAAYVG 217
           Q     +IRP A YVG
Sbjct: 356 QRIDNKIIRPSANYVG 371


>gi|300312274|ref|YP_003776366.1| citrate synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 456

 Score = 84.7 bits (208), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 91/199 (45%), Gaps = 26/199 (13%)

Query: 42  RALVLCADHELNASGFTARCIASTGANLQAAVIGGLAALSGPLHGGTTARVEALLETLDE 101
           R L+L ADHE NAS  T R   S+GAN  A +  G+A L GP HGG       +LE +  
Sbjct: 249 RILILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLEQIGS 308

Query: 102 QDDPAASLRQRLAR--GEELPGFGHHLYPQGDVRASALLAPLLPV--------HPRWQQT 151
            D     ++Q   +  G +L GFGH +Y   D RA  +      V         P ++  
Sbjct: 309 VDKIPEFIKQVKDKNSGVKLMGFGHRVYKNYDPRAKLMRETCYEVLNELGLHDDPLFKLA 368

Query: 152 IE-----------VVRELTGHPPSVDFALAAVRRHLHLPPGSAFGLFALGRSLGWIAHAL 200
           +E           V R+L    P+VDF    V+R L +P      +FA+ R++GWIA   
Sbjct: 369 MELEKIALEDEYFVSRKLY---PNVDFYSGIVQRALGIPTSMFTCIFAMARTIGWIAQWN 425

Query: 201 EQGRG--GSLIRPRAAYVG 217
           E        + RPR  +VG
Sbjct: 426 EMISDPEQKIGRPRQLFVG 444


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 792,383
Number of extensions: 35733
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)