BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0023.p
         (358 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine...   149   4e-37
gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine...    67   2e-12

>gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 469

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 89/118 (75%)

Query: 136 RQPSPCRSRPLAGVRVLDLTRVLAGPTATRLLAAFGADVLRIDPASWEEPGVIPDMTLGK 195
           R   P R RPL G+RVLDLTR+LAGP ATR LA  GA+VLRIDP  WEEP  +P++ LGK
Sbjct: 198 RAWEPSRDRPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVLGK 257

Query: 196 RCAGLDLRQPAGRAVLEALVRQADVMVHGYRADALERLGLGAHRRRELNPGLVDVALN 253
           RCA L+L+ PA    L  L+  AD++VHGYR+DAL +LGL A +RRELNP L+DV+L+
Sbjct: 258 RCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVSLD 315



 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 67/97 (69%)

Query: 32  GEGGLPSVFATTDLAQASVAAAGLALAGLVSGTGGAYPEVSCDRRLAAMWFSSSLRPEGW 91
           G G L S F  TDLA A++ AA  A A L+  + G  P V  DRR+A++WF +SL P GW
Sbjct: 35  GTGELVSAFRVTDLAAAAIGAAATAAAELLQASTGHLPAVHVDRRMASLWFGASLHPLGW 94

Query: 92  APPPLWDAVAGDYRAADGWIRLHTNASHHRAAALAAL 128
             PPLWDA+AG+YRA D WIRLHTNA HHR AAL+ L
Sbjct: 95  TMPPLWDAIAGNYRARDRWIRLHTNAPHHRQAALSVL 131


>gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 12/121 (9%)

Query: 145 PLAGVRVLDLTRVLAGPTATRLLAAFGADVLRIDPASWEEP----GVIPDMTL------- 193
           PLAG++VL+L  ++AGP  +R+LA FGADV++++     +P     V+ D T        
Sbjct: 10  PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69

Query: 194 -GKRCAGLDLRQPAGRAVLEALVRQADVMVHGYRADALERLGLGAHRRRELNPGLVDVAL 252
             K+   L+++    + +   L  +ADV++  YR   LE+  LG    ++LNP  + V L
Sbjct: 70  RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129

Query: 253 N 253
           +
Sbjct: 130 S 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,087,918
Number of extensions: 44194
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,212,660
Effective search space: 329843520
Effective search space used: 329843520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)