BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0018.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase [Herb...   414   e-117
gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase [Herb...    70   2e-13

>gi|300311792|ref|YP_003775884.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score =  414 bits (1064), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/267 (76%), Positives = 226/267 (84%), Gaps = 7/267 (2%)

Query: 1   MRSGSLSHRAAEHQPASTAEARSDTELVLTGDVPLRDLDPWPLTVATYNIHGAIGTDGVF 60
           MRS  LS R        TA A +DTELVL+ D P+   DPWPLTVATYNIHGA+GTDG F
Sbjct: 1   MRSARLSER-------QTAPAPADTELVLSADAPVPGRDPWPLTVATYNIHGAVGTDGRF 53

Query: 61  SPQRIAQVLKEINADVVALQEVPLGGSSQPDVLSLLRKETGFFAVEGPTMESAERRYGNA 120
           +P+R+A VL E+ ADVVALQEVPLGG+ Q DVL+LLR  TG FA EGPTMES  RRYGNA
Sbjct: 54  APERVAAVLDELQADVVALQEVPLGGADQVDVLALLRAHTGMFAAEGPTMESPARRYGNA 113

Query: 121 VLSRYPILAKQSIDLSFGSREPRGALDADIDCHGHMLRVIATHLGLKPAERRAQIKRLLQ 180
           VLSRYPILA +SIDLSFGSREPRGALDADIDC G +LRV+ATHLGLKPAERRAQIKRLLQ
Sbjct: 114 VLSRYPILATESIDLSFGSREPRGALDADIDCRGQLLRVVATHLGLKPAERRAQIKRLLQ 173

Query: 181 AFDTDQAPVILMGDVNEWFMWGRALRWLVSHFEAAPAPRTFPSRWPLFALDRIWISPRQR 240
           AFDT+ APVIL+GDVNEWFMWGR LRWLV HFEAAPAP TFPSRWP+FALDRIWISPR+R
Sbjct: 174 AFDTNDAPVILLGDVNEWFMWGRTLRWLVGHFEAAPAPPTFPSRWPVFALDRIWISPRRR 233

Query: 241 LLQVQVHRTALSRVASDHLPLVAHIDG 267
           L  + VHR+AL+RVASDHLPL+AHI G
Sbjct: 234 LQHLAVHRSALARVASDHLPLLAHIAG 260


>gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 112/267 (41%), Gaps = 51/267 (19%)

Query: 43  LTVATYNIHGAIGTDGVFSPQRIA--QVLKEINADVVALQEVPLGGSSQPDVLSLLRKET 100
           L VATYNIH  + T     P+ +A  Q L +++ D++ LQEV      + D L+ LR  +
Sbjct: 3   LRVATYNIHKGV-TSFAGRPRILALKQALAQLDPDILFLQEV----QGRHD-LNALRHAS 56

Query: 101 GF--------------FAVEGPTMESAERRYGNAVLSRYPILAKQSIDLSFGSREPRGAL 146
            +               A  G         +GNA++SR+ I + ++ D+S  + E RG L
Sbjct: 57  NWPQQGQHEYLAGDTHHAAYGMNAVYDHGHHGNALISRFEIASIRNQDVSDHAYESRGIL 116

Query: 147 DADIDCHGHMLRVIATHLGLKPAERRAQIKRLLQAFDTDQ---APVILMGDVNEWF-MWG 202
              +   G  +     HLGL    RR QI  L+QA  T     AP+++ GD N+W     
Sbjct: 117 HCVVPVEGVEVHCYVIHLGLFAGGRRRQIDALIQAVSTSSPPDAPLLIAGDFNDWTNQLS 176

Query: 203 RALRWLVSHFEAAPAP------------------------RTFPSRWPLFALDRIWISPR 238
           R L   +   E    P                        RTFP+  P   LDRI++   
Sbjct: 177 RTLYQNLGVTEVFDQPQPNARGVMQGLRRLGGLSAPIRPARTFPAMMPWLRLDRIYVRGF 236

Query: 239 QRLLQVQVHRTALSRVASDHLPLVAHI 265
            R+   +V +       SDH P+V  +
Sbjct: 237 -RVETAEVLKDGPWARLSDHAPIVTEL 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 897,399
Number of extensions: 38814
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)