BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0019.0012.p (241 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311788|ref|YP_003775880.1| methyl-accepting chemotaxis pro... 390 e-110 gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sen... 67 2e-12 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 64 1e-11 gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis pro... 62 4e-11 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 60 1e-10 >gi|300311788|ref|YP_003775880.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 390 bits (1001), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/241 (80%), Positives = 215/241 (89%) Query: 1 MFQSLLLVALGAALAGLPMAALWLRQKRRARQLIDAGQLERVRDQAQAALAEQQQQWSAH 60 M ++LLVALGA LAGLP+A LWLRQ+RRA++LIDAGQLE VR QAQ ALA Q+QQ AH Sbjct: 1 MVNAILLVALGAVLAGLPLALLWLRQQRRAQRLIDAGQLELVRQQAQEALARQEQQMQAH 60 Query: 61 QQQLEQDRLAAQQHMAEMRRESEAMLARLSSEQSDHVSRVRQSCDESQDTISKLLGLVRT 120 +QQ Q+R +AQQ + EMR ESE M+ +L S+QSD+ SRV+++CD SQDTI+KLLGLVRT Sbjct: 61 EQQARQERQSAQQLLEEMRLESETMIGQLQSQQSDNFSRVKENCDASQDTIAKLLGLVRT 120 Query: 121 FERWHDDMNELIAHNREMHRKNDEFALIVNQVIIVALNASIEAARAGVHGRGFAVVAQEV 180 FERWHDDMN LIAHNR+MHR NDEFALIVNQVIIVALNASIEAARAG HGRGFAVVAQEV Sbjct: 121 FERWHDDMNVLIAHNRDMHRMNDEFALIVNQVIIVALNASIEAARAGAHGRGFAVVAQEV 180 Query: 181 RDLAQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRQALAEA 240 RDLAQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTR LAEA Sbjct: 181 RDLAQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLINKKTRDTLAEA 240 Query: 241 A 241 A Sbjct: 241 A 241 >gi|300312424|ref|YP_003776516.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 531 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 26/204 (12%) Query: 14 LAGLPMAALWLRQKRRARQLI--------DAGQLER----VRDQAQAALAE-QQQQWSAH 60 L G P A+WL + A L D G L R +RDQ + + Q S H Sbjct: 206 LGGEPGEAMWLSGQIAAGNLAARLELKSNDNGSLMRSLMIMRDQLSGLVGQIQHASTSIH 265 Query: 61 --QQQLEQDRLAAQQHMAEMRRESEAMLARLSSEQSDHVSRVRQSCDESQDTISKLLGLV 118 Q++ Q + +++ E A L +S + S V+Q+ ++ S Sbjct: 266 VAAQEIAQGNI----DLSQRTEEQAASLEETASSMEELTSTVQQNAGNAKQASSMASAGA 321 Query: 119 RTFERWHDDMNELIAHNREM----HRKNDEFALIVN---QVIIVALNASIEAARAGVHGR 171 R ++ +++A REM H+ +D ++I Q I+ALNA++EAARAG +GR Sbjct: 322 EVARRGEAEIADVVATMREMSVSSHQMSDIISVIEGISFQTNILALNAAVEAARAGENGR 381 Query: 172 GFAVVAQEVRDLAQRAEKLSKSYR 195 GFAVVA EVR LAQR+ +K + Sbjct: 382 GFAVVASEVRALAQRSSAAAKEIK 405 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 38/230 (16%) Query: 6 LLVALGA----------ALAGLPMAALWLRQKRRARQLIDAGQLERVRDQA-QAALAEQQ 54 +L+A+GA AL G P AA + Q+ A L A L+ + A+L + Sbjct: 200 VLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVAVPLKPNDSHSLMASLGSMR 259 Query: 55 QQWS----AHQQQLEQDRLAAQQ------HMAEMRRESEAMLARLSSEQSDHVSRVRQSC 104 +Q + Q E +AA + +++ E A L +S + S VRQ+ Sbjct: 260 EQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAASLEETASSMEELTSTVRQNS 319 Query: 105 D---------ESQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFALIVNQVIIV 155 D E+ T++ G V R D MNE+ + ++ I Q I+ Sbjct: 320 DNARQANTLAENASTLAAKGGEV--VSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNIL 377 Query: 156 ALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRANLYQNDLIT 205 ALNA++EAARAG GRGFAVVA EVR LAQR+ +K + DLIT Sbjct: 378 ALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVK------DLIT 421 >gi|300313306|ref|YP_003777398.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 507 Score = 62.0 bits (149), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 81/159 (50%), Gaps = 22/159 (13%) Query: 64 LEQDRLAAQQHMAEMRRESEAMLARLSSEQSDHVSRVRQSCDESQDTISKLLGLVRTFER 123 LEQ A ++ + +RR ++ AR ++ + VS V S +S ++G Sbjct: 286 LEQTAAAMEEITSTVRRNADH--ARQANAMAGSVSEV---ASRSGLVVSDVVG------- 333 Query: 124 WHDDMNELIAHNREMHRKNDEFALIVNQVIIVALNASIEAARAGVHGRGFAVVAQEVRDL 183 M+E+ A RE+ I Q I+ALNA++EAARAG GRGFAVVA EVR L Sbjct: 334 ---TMDEIQASAREIEEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSL 390 Query: 184 AQRAEKLSKSYRANLYQNDLITTTTFQDLQAGGKMIMGA 222 AQR+ +K + DLI + + + AG K++ A Sbjct: 391 AQRSATAAKEIK------DLI-GNSVEKIAAGSKLVQAA 422 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 45/75 (60%) Query: 121 FERWHDDMNELIAHNREMHRKNDEFALIVNQVIIVALNASIEAARAGVHGRGFAVVAQEV 180 F+R M+ + A + +M I Q I+ALNA++EAARAG GRGFAVVA EV Sbjct: 346 FDRVVQTMDRITASSSKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 405 Query: 181 RDLAQRAEKLSKSYR 195 R LAQR+ +K + Sbjct: 406 RSLAQRSAVAAKEIK 420 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.129 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 509,427 Number of extensions: 16838 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 65 Length of query: 241 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 158 Effective length of database: 1,226,865 Effective search space: 193844670 Effective search space used: 193844670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)