BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0011.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311787|ref|YP_003775879.1| hypothetical protein Hsero_2472...   287   5e-79

>gi|300311787|ref|YP_003775879.1| hypothetical protein Hsero_2472
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  287 bits (734), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 148/209 (70%), Positives = 167/209 (79%), Gaps = 7/209 (3%)

Query: 1   MSANDMDELQAVAEIVADE----RISASACDGFDTLLQQALRSSLVPSDASAEISVVEDI 56
           MSAN+MDE+QAV    A      R+SA+A DG D LLQQALRSSLVPS   A   V++DI
Sbjct: 1   MSANEMDEVQAVTAAAAQAVQEERVSAAARDGLDVLLQQALRSSLVPSGCQAAFEVLDDI 60

Query: 57  AALTEKKMVVLTISSYLFRLMVMFHFTPDAATRGHFARLTRVSAGEMGEQALMDAIAECG 116
           + + EKKMVVLTISSYLFR++VMFHFT DAATR HFA L  V+A EM EQ L+DAIAECG
Sbjct: 61  SHVQEKKMVVLTISSYLFRMVVMFHFTADAATRAHFASLHNVAAAEMSEQGLLDAIAECG 120

Query: 117 NLCCGIFNRELGRFFPHLGMSTPNVIDTQCVAYLQKLNCAHVRHFAIDMA---DTPRLHV 173
           NLCCGIFNRELGR+FPHLGMSTPNVID QC AYLQKLNCAH+RHFAID+A   ++PR HV
Sbjct: 121 NLCCGIFNRELGRYFPHLGMSTPNVIDRQCAAYLQKLNCAHIRHFAIDLAELPESPRFHV 180

Query: 174 SLALSTYDRLDFAVAPGEEADTTGELELF 202
           SL +S Y  LDFAVA  E+ DTTGELELF
Sbjct: 181 SLCVSAYAPLDFAVAAEEQVDTTGELELF 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 576,636
Number of extensions: 20714
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)