BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0003.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [...   100   2e-22
gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill...    57   2e-09

>gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 603

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 11  IMGAALQHYNAGRAAEAEQACHALLALVPQHPAAHQLLAMLALDRQALAQARQHILLSLA 70
           ++  AL  +  G+ A AE+    +L  +P+H  A+ L  ML L ++    A   +  ++ 
Sbjct: 11  LLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAEAQLAKAIE 70

Query: 71  PRPQHVPSLL-MAGRIA-LAEGDPATAVQYFDAAARHQPELSQAHFHLGTSLSAVGRHAE 128
             P H+ +    AG +A L   D A A   +D       +  +A    G +L  +GR+ E
Sbjct: 71  LNPDHLDTYFDHAGALAHLGRDDEAVA--RYDLVLTVNADFVEALLARGAALRRLGRNRE 128

Query: 129 AVAALRQAVALAPQAMEAVLNLGSALRELGELPAAREAFKQSCRLRPEVAETWFNLGLTL 188
           A+A L +A ALAP   +A    G+ L +      ARE+++++  LRP+  E WFNLG T 
Sbjct: 129 ALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTC 188

Query: 189 QDMKEGAAAVDAFARALQLRPGYADAALNLGVALQEIHRMDDALQAFRTALRL 241
           +D  +   A+ A+ RAL+++P + +A  N G  L ++ R  +ALQA+  AL L
Sbjct: 189 KDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALAL 241


>gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 81  MAGRIALAEGDPATAVQYFDAAARHQPELSQAHFHLGTSLSAVGRHAEAVAALRQAVALA 140
           MAGR+     D A A+  ++A     P    A  + G  L   G+H EA+  L  A AL 
Sbjct: 30  MAGRL-----DQACAI--YEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASALE 82

Query: 141 PQAMEAVLNLGSALRELGELPAAREAFKQSCRLRPEVAETWFNLGLTLQDMKEGAAAVDA 200
           P   +   + G+ L  L +   A +A+  +  LRP+    W NLG  L    +   A+ A
Sbjct: 83  PDNADWHNDRGNVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPDAISA 142

Query: 201 FARALQLRPGYADAALNLG 219
           F RALQ+ P +  + L+LG
Sbjct: 143 FERALQIDPDFLPSLLHLG 161


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 705,191
Number of extensions: 24456
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 11
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)