BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0019.0001.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311524|ref|YP_003775616.1| hypothetical protein Hsero_2209...   471   e-134

>gi|300311524|ref|YP_003775616.1| hypothetical protein Hsero_2209
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  471 bits (1213), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/248 (90%), Positives = 239/248 (96%)

Query: 69  QRWYEATPPGFLFSHKGNRFITHTRRLQDIDGALANVFASGVLNLKEKLGPFLWQFPPSF 128
           QRWYE TPPGFLFSHKGNRFITHTRRLQDIDGALANVFASGV NLKEKLGPFLWQFPPSF
Sbjct: 57  QRWYEQTPPGFLFSHKGNRFITHTRRLQDIDGALANVFASGVFNLKEKLGPFLWQFPPSF 116

Query: 129 RYDPEPLEHFLSLLPHDTEAAQRLARCHEPRMEGRVALDIDRKRKLRHAMEIRHDSFVDE 188
           RY+PE LEHFLSLLPHDTEAA  LA+ HEPRM+GRVAL++D+KRKLRHAMEIRHDSFVDE
Sbjct: 117 RYEPESLEHFLSLLPHDTEAAMALAQGHEPRMQGRVALEVDKKRKLRHAMEIRHDSFVDE 176

Query: 189 SFIKLLRKYKVALVVADAPKKWPYQEDVTADFMYLRLHGDKRLYQSGYSDEAIDAWAERI 248
           SFI+LLRKY+VALV+ADAPKKWPYQEDVTADFMYLRLHGDKRLYQSGYSDEAIDAWAERI
Sbjct: 177 SFIQLLRKYQVALVIADAPKKWPYQEDVTADFMYLRLHGDKRLYQSGYSDEAIDAWAERI 236

Query: 249 RAWASGGQPEDGPRISGSAPRKRASRDIYCYFDNDMKVKAPFDARRLIDRLGLKLDLPPP 308
           RAWA+GGQPE GPRIS +APRKRASRD+YCYFDNDMKVKAPFDARRLI+RLGLKL+LPPP
Sbjct: 237 RAWAAGGQPEQGPRISAAAPRKRASRDVYCYFDNDMKVKAPFDARRLIERLGLKLELPPP 296

Query: 309 GHMLDEDR 316
           G MLDED+
Sbjct: 297 GLMLDEDQ 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,138,616
Number of extensions: 50099
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)