BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0016.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309606|ref|YP_003773698.1| acetate kinase [Herbaspirillum ...   214   7e-57
gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC t...   190   1e-49
gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC t...    86   2e-18
gi|300310681|ref|YP_003774773.1| amino acid ABC transporter peri...    78   8e-16

>gi|300309606|ref|YP_003773698.1| acetate kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 397

 Score =  214 bits (544), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 125/147 (85%)

Query: 83  AWDAGVLLYLLQQGMTPAALEDLLYHQSGLLGVSGVSADVRTLQQSTEPSARQALELFAL 142
           A DAGVLLYLL+QGM+   LEDLLYH+SGLLGVSG+SADVR+LQQS + +AR+AL+LFAL
Sbjct: 242 ALDAGVLLYLLRQGMSLDELEDLLYHRSGLLGVSGLSADVRSLQQSQDSAAREALDLFAL 301

Query: 143 RCAGEAARLATTLGGMDALVFTAGIGEHDARMRAAICARLDWLGVQLDESANAQHLECIS 202
           RCAGEAARLA+TLGG+DALVFTAGIGEHDA MRAAIC RL WLGV+LD  ANA H   IS
Sbjct: 302 RCAGEAARLASTLGGIDALVFTAGIGEHDAAMRAAICERLGWLGVRLDPQANAAHAGRIS 361

Query: 203 HQASRVRVLVIPTNEEQVIADDAARLI 229
              S V V VIPTNEEQVIADDAA L+
Sbjct: 362 RADSAVSVYVIPTNEEQVIADDAAALL 388


>gi|300313408|ref|YP_003777500.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 381

 Score =  190 bits (482), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 103/128 (80%), Gaps = 10/128 (7%)

Query: 1   VPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPAANPIRKVA 60
           VPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPA+NPIRKVA
Sbjct: 224 VPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPASNPIRKVA 283

Query: 61  LDYTAKYEAAHGKDSVSLFGGYAWDAGVLLY----LLQQGMTP------AALEDLLYHQS 110
           LDYT KYEA HGKDSVSLFGGYAWDAGVLL     +  +G  P      AAL D+L    
Sbjct: 284 LDYTTKYEAVHGKDSVSLFGGYAWDAGVLLRWAIPVALKGAKPGTPEFRAALRDVLEATK 343

Query: 111 GLLGVSGV 118
            + GV GV
Sbjct: 344 EVTGVHGV 351


>gi|300313298|ref|YP_003777390.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 381

 Score = 86.3 bits (212), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 4/103 (3%)

Query: 1   VPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPAANPIRKVA 60
           +P +AL ERG+KG+I+QTH  A+ D +R+GGK ++G  + +GP +V   LP +N  +K+A
Sbjct: 223 MPHKALIERGYKGKIFQTHSAASRDLIRLGGKDVEGAYVISGPAVVPEALPDSNASKKLA 282

Query: 61  LDYTAKYEAAHGKDSVSLFGGYAWDAGVLLYLLQQGMTPAALE 103
           +D+  +YE   G  S +LF  + +DA ++L    Q + P AL+
Sbjct: 283 MDFVTRYEKQFGAGSRNLFAAHTYDAQLVL----QKVVPEALK 321


>gi|300310681|ref|YP_003774773.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score = 77.8 bits (190), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 11/128 (8%)

Query: 1   VPQRALKERGFKGQIYQTHGVANADFLRVGGKMLDGTLLPAGPVLVAAQLPAANPIRKVA 60
           +PQ  L ++G+KG+IYQTHG A   FL++G   ++GT+L A  +LV  ++P +NP +KVA
Sbjct: 228 LPQTTLFDQGYKGKIYQTHGAALPAFLQLGKNKVEGTILAASLMLVLPEIPDSNPSKKVA 287

Query: 61  LDYTAKYEAAHGKDSVSLFGGYAWDAGVLLY----LLQQGMTP------AALEDLLYHQS 110
            DY   Y+  +     + FG   +DAG+LL     +  +   P      AAL D L +  
Sbjct: 288 TDYIEAYKKMYNAVPAT-FGANVYDAGLLLEKAIPVAARKAKPGSKEFRAALRDALENTK 346

Query: 111 GLLGVSGV 118
            ++G  GV
Sbjct: 347 EVVGTQGV 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 793,205
Number of extensions: 34123
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 4
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)