BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0014.p (478 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspi... 363 e-101 gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspi... 354 1e-98 gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspi... 320 2e-88 gi|300312843|ref|YP_003776935.1| response regulator containing a... 191 1e-49 gi|300310865|ref|YP_003774957.1| response regulator containing a... 179 6e-46 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/486 (41%), Positives = 292/486 (60%), Gaps = 18/486 (3%) Query: 2 IMVLMAILLGGGAIYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQ 61 I VLM + + +YQS+QQ +++A+ +A+N+TLV QR + R+ E LD++ R++ Sbjct: 35 IAVLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEMLSLSLDTLAYRFQH 94 Query: 62 VLHFPVSGSELG-----SFLFTGGQANRYIVETAVLDKHGLLVSSSRSSPALLTNDFSDA 116 P+S L ++LF +I AVLD G + SSR ++D Sbjct: 95 ----PLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRGNGAPHYADR 150 Query: 117 PFFQAQQNTDSPAGKLFLSKPIQ--LAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFR 174 +F A + DSP L++S+P+Q L + VVVLS+R+++ G+FAGV +M LDLAYFR Sbjct: 151 AYFIAHR--DSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYFR 208 Query: 175 SMLEGVDVGNNGILSIYSRDATVYVRIPYDPAMVGRNLSSA---PMLDSFLKQDSGHFFW 231 + EG+ +G+ GI+S+YS + Y+R+PY ++GR++S L + L ++ G FF Sbjct: 209 ELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGSFFA 268 Query: 232 KSVNDGVERLYAFHAVPGTNLVVFVGYAKSNIYNYWQKTL-AILIIGSILLIFSALSFFR 290 + NDGV RLY F +PG+ L+VFVGYA+ I+ W+KT A+L+ +I + +A Sbjct: 269 HATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAIFGLLTAWLLLH 328 Query: 291 SMQSEFLRRHASEKTLTTLATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDV 350 Q E RR +E+ L LA DGLT L+NRR++DE ++ W+ + SV+FIDV Sbjct: 329 VRQ-ELRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWERCQRNLGASFSVLFIDV 387 Query: 351 DFFKLYNDGYGHQSGDLVLAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKV 410 D+FK YND YGH+ GD VL +VAA L L R+ D A RYGGEEFVV+L +D GA + Sbjct: 388 DYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMM 447 Query: 411 AERIRAAVEHLALPHAHSRFGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRN 470 A+R+ AV + H S +VTIS+GVA + H + E +L AD ALY AK AGR+ Sbjct: 448 AQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAADAALYRAKQAGRD 507 Query: 471 RVEISS 476 RV +SS Sbjct: 508 RVHLSS 513 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 354 bits (908), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 189/484 (39%), Positives = 299/484 (61%), Gaps = 15/484 (3%) Query: 2 IMVLMAILLGGGAIYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQ 61 ++++M + + G ++Y+ ++Q + +AI A N+TL++QR + R+ E +D++ RY+ Sbjct: 14 LIIMMVLSICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTLAYRYQH 73 Query: 62 VLHFP-VSGSELGSFLFTGGQANRYIVETAVLDKHGLLVSSSR--SSPALLTNDFSDAPF 118 L S E ++LF A +I A+LD G + +SR +SP+++ N +S+ + Sbjct: 74 PLDLTHASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVN-YSERTY 132 Query: 119 FQAQQNTDSPAGKLFLSKPIQ--LAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSM 176 F + DS LF+S+PI+ L + VVVLS+R++ G+F GV +M LD++YFR + Sbjct: 133 FTVHR--DSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDL 190 Query: 177 LEGVDVGNNGILSIYSRDATVYVRIPYDPAMVGRNLSSAP---MLDSFLKQDSGHFFWKS 233 G+ +G +GI+S+YS D Y+R+PY P+ +GR +++ P L + L + G+FF ++ Sbjct: 191 FTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFARA 250 Query: 234 VNDGVERLYAFHAVPGTNLVVFVGYAKSNIYNYWQKTLAILIIGSILLIFSALS--FFRS 291 DGVERLY F +P L+V +G ++ I+ W TL +++ +L+IF+AL+ Sbjct: 251 HTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLL--LLIIFTALAGVLLML 308 Query: 292 MQSEFLRRHASEKTLTTLATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVD 351 ++ E L+R A+EK L LA DGLTGL+NRRS+DE + WQ + S +FIDVD Sbjct: 309 VRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGFSTLFIDVD 368 Query: 352 FFKLYNDGYGHQSGDLVLAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVA 411 +FK YND YGH+ GD VL VAA LR L R D A RYGGEEFVV+L +D GA ++A Sbjct: 369 YFKRYNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTDEHGALRMA 428 Query: 412 ERIRAAVEHLALPHAHSRFGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRNR 471 +++ A+ + +PH+ S G++++S+GVA + H + E +L AD ALY AK GRNR Sbjct: 429 QQLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRMEDVLNAADHALYIAKREGRNR 488 Query: 472 VEIS 475 V ++ Sbjct: 489 VCVA 492 >gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 320 bits (819), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 171/472 (36%), Positives = 264/472 (55%), Gaps = 6/472 (1%) Query: 6 MAILLGGGAIYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQVLHF 65 M + +YQSH+Q + AI H ANI + QR + R+ E LDS+ RYR Sbjct: 1 MTATVSCAVLYQSHRQVERAAIEHGANIARIAQRSISRNVELLTLALDSLTWRYRHTQLH 60 Query: 66 PVSGSELGSFLFTGGQANRYIVETAVLDKHGLLVSSSRSSPALLTNDFSDAPFFQAQQNT 125 + + FL RY+ ++D G LV S + +L ++ + FF A Q Sbjct: 61 EMPLQQKMEFLLGENIEARYVAALGIVDTDGELVVGSAALSQILPGPYAQSDFFTAHQTH 120 Query: 126 DSPAGK-LFLSKP--IQLAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSMLEGVDV 182 + L++S P ++L + VVVLS+R+ G+FAG+++MVL L YFR + +G+ + Sbjct: 121 HAQGDTGLYISAPLTVRLERRMQVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGLTL 180 Query: 183 GNNGILSIYSRDATVYVRIPYDPAMVGRNLSSAPMLDSFLKQD---SGHFFWKSVNDGVE 239 N+G++S+YS D Y+RIPY+ A +G L+ + L+ G +F ++ DG Sbjct: 181 ENDGVISLYSADGLAYMRIPYNEAFIGSRLNISEDLERIFSPSGPAQGSYFARAQQDGPR 240 Query: 240 RLYAFHAVPGTNLVVFVGYAKSNIYNYWQKTLAILIIGSILLIFSALSFFRSMQSEFLRR 299 LY F VPGT VF+G + I+ W L ++ +++ R ++ E RR Sbjct: 241 WLYTFARVPGTGWTVFIGRTGARIFREWYNMLYAVLFLMASFCIASIYLIRRVRVELQRR 300 Query: 300 HASEKTLTTLATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDFFKLYNDG 359 A ++ L LA D LT L+NRR++DE + R W+ E S++F+DVDFFKLYND Sbjct: 301 SALDQQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDT 360 Query: 360 YGHQSGDLVLAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAERIRAAVE 419 YGH++GD L V+ + +++R D + RYGGEEFVV+L G+D GA+ VA+RI +A++ Sbjct: 361 YGHKAGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQ 420 Query: 420 HLALPHAHSRFGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRNR 471 L +PH S F ++T+S+GV + H+ E ++ +AD ALY AK GRN+ Sbjct: 421 SLKIPHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472 >gi|300312843|ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 191 bits (484), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/412 (34%), Positives = 222/412 (53%), Gaps = 34/412 (8%) Query: 91 VLDKHGLLVSSSRSSPALLTNDFSDAPFFQAQQNTDSPA---GKLFLSKPIQLAKDYFVV 147 V D+HG + +S S+P L + SD +F ++ D GK LS+ + +++ Sbjct: 115 VFDEHGKRLLTS-SAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSR----STGRWII 169 Query: 148 VLSRRITDMQGNFAGVAIMVLDLAYFRSMLEGVDVGNNGILSIYSRDATVYVRIPYDPAM 207 +SRR+ G+FAGV + LD+ +F + V++G G +++ RD T+ R+P+DP Sbjct: 170 PMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGY 229 Query: 208 VGRNLSSAPM-LDSFLKQDSGHFFWKSVNDGVERLYAFHAVPGTNLVVFVGYAKSNIYNY 266 + R+ S + L+ G+ S D +R ++ AV LV+ V A+ Sbjct: 230 INRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALAD 289 Query: 267 WQKTL-----AILIIGSILLIFSALSFFRSMQSEFLRRHASEKTLTTLATI--------- 312 W++ A+L++ +I+ +F +R + LR A ++ L + + Sbjct: 290 WKQQTFVYGAAVLLLLAIIGVFG----WRLVGQIELRLRAEDRALQAMGELQMANHRLEM 345 Query: 313 ----DGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDFFKLYNDGYGHQSGDLV 368 DGLTGL NRR +D ++E ++ E + L++I IDVDFFK YND YGHQ+GD Sbjct: 346 LAHQDGLTGLANRRHLDTMLETEFKRA-ERSGAALALIMIDVDFFKQYNDLYGHQAGDEC 404 Query: 369 LAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAERIRAAVEHLALPHAHS 428 L +VA L+ R D AARYGGEE ++LPG+DA GA VAE++RA ++ L LPH + Sbjct: 405 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQALELPHRGN 464 Query: 429 RFGMVTISLGVAQADLQRHA--QAEQLLAEADQALYAAKSAGRNRVEISSAI 478 G+VT+S+GV +L A + LL AD ALY AK GRN+V +++ + Sbjct: 465 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPM 516 >gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 179 bits (453), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 134/407 (32%), Positives = 200/407 (49%), Gaps = 28/407 (6%) Query: 86 IVETAVLDKHGLLVSSSRSSPALLTNDFSDAPFFQAQQN--TDSPAGKLFLSKPIQL-AK 142 + + V+D+ G V+SS+ + D +FQ Q+ +D P F+ +P++ Sbjct: 116 LAQLTVVDEQGRTVASSQQRMVQTGSPVQD-DYFQYHQHRRSDRP----FIGQPMRSHVT 170 Query: 143 DYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSMLEGVDVGNNGILSIYSRDATVYVRIP 202 + +SRRI + G+FAGV + +DLAYF+ E ++G +G++ ++ +R P Sbjct: 171 GQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFGLTGGSLILRRP 230 Query: 203 YDPAMVGRNLSSAPMLDSFLKQ-DSGHFFWKSVNDGVERLYAFHAVPGTNLVVFVGYAKS 261 M R+ + + L ++Q G F +S DGVER+ F + V AK Sbjct: 231 LLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQGEAYPIFTVVALAKD 290 Query: 262 NIYNYWQKTLAILIIGSILLIFSALSF------------FRSMQSEFLRRHASE---KTL 306 +I W + + + IG +LL+ + + F R+ R E +TL Sbjct: 291 DILEDWSRHVWVRGIGVVLLL-AVICFGGKRLVVLVAGRERAEAQAIAARQELESLYRTL 349 Query: 307 TTLATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDFFKLYNDGYGHQSGD 366 + DGLT + NRR D + L T LS++ IDVD FK +ND YGH +GD Sbjct: 350 EAQSQKDGLTDVFNRRYFDAALAAELARLNR-TGESLSLMMIDVDHFKQFNDTYGHAAGD 408 Query: 367 LVLAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAERIRAAVEHLALPHA 426 + L QVAAA+ T R D ARYGGEEF VILP A +A R+ AV L + H Sbjct: 409 VCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLAHRVVQAVRGLEIAHE 468 Query: 427 HSRFGMVTISLGVAQADLQRH--AQAEQLLAEADQALYAAKSAGRNR 471 S G+VTIS+GVA + + +L+ AD ALY AK GR+R Sbjct: 469 RSPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEEGRDR 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,340,924 Number of extensions: 53670 Number of successful extensions: 265 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 40 Length of query: 478 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 389 Effective length of database: 1,198,455 Effective search space: 466198995 Effective search space used: 466198995 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)