BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0011.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309609|ref|YP_003773701.1| transport/efflux transmembrane ...   378   e-106
gi|300309658|ref|YP_003773750.1| HlyD-family secretion protein [...    55   5e-09
gi|300313899|ref|YP_003777991.1| RND family efflux transporter M...    54   1e-08

>gi|300309609|ref|YP_003773701.1| transport/efflux transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  378 bits (971), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/248 (83%), Positives = 223/248 (89%)

Query: 1   LQRDTAQAAEQLISAQQLEQSQDAHAAALSQFKAAQARASVAGNQRDYTTLVAQHDGVIS 60
           LQRD  QA E LIS QQLEQSQDAHAAALSQFKAAQARA+VAGNQRDYTTLVAQHDGVIS
Sbjct: 129 LQRDVQQAREALISPQQLEQSQDAHAAALSQFKAAQARAAVAGNQRDYTTLVAQHDGVIS 188

Query: 61  AEQANTGDVLSPGQPVYSLAWSGAVDVVTDVADRQLAGLQPGAAAEVTLAALPGKTYKGR 120
           AEQANTGDVL+ GQPVYSLAWSG VDVVT+VADRQ+A LQPGAAA VTLAALPGKT+ G+
Sbjct: 189 AEQANTGDVLAAGQPVYSLAWSGQVDVVTEVADRQVATLQPGAAAVVTLAALPGKTFTGK 248

Query: 121 VREVSPAADPQSRTFRIKVTLEQPDASVRLGMTGEVKITPADTAQGQVLMLPATALFHQG 180
           VREVSPAAD QSRT+R+KVTLEQPD +VRLGMTGEV ITPA ++   VL+LPATALFHQG
Sbjct: 249 VREVSPAADAQSRTYRVKVTLEQPDPAVRLGMTGEVAITPAASSAAPVLLLPATALFHQG 308

Query: 181 GKPAVWVVTNDGKLELRPVTVAAYGERSISLSQGVATQDKVVVQGVHTLTVGEKVKPVAP 240
            +PA+WVV   G+LELRPVTVAAYGERSIS+SQGV   DKVVVQGVHTLT GEKVKPVAP
Sbjct: 309 DRPALWVVGEQGQLELRPVTVAAYGERSISVSQGVTASDKVVVQGVHTLTAGEKVKPVAP 368

Query: 241 LHAEDFAL 248
           LHAEDFAL
Sbjct: 369 LHAEDFAL 376


>gi|300309658|ref|YP_003773750.1| HlyD-family secretion protein
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score = 55.1 bits (131), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 13/253 (5%)

Query: 1   LQRDTAQAAEQLISAQQLEQSQDAHAAALSQFKAAQARASVAGNQRDYTTLVAQHDGVIS 60
           L R     ++  I+ +  E+ Q+A   A +   AA+A    A    +YT + A   G IS
Sbjct: 137 LARGQRLLSDNAIAKRDFEEKQNASREASANVAAARAALRAARLNLEYTRITAPVSGRIS 196

Query: 61  AEQANTGDVLSPG---QPVYSLAWSGAVDVVTDVADRQ-LAGLQPGAAA------EVTLA 110
             +   G+V++PG    P+ +L     V    DV ++  L  + P  AA      E+ LA
Sbjct: 197 RAEVTVGNVVNPGAANAPLTTLVSVAKVYASFDVDEQSFLKYVNPARAAGATVPVELGLA 256

Query: 111 ALPGKTYKGRVREVSPAADPQSRTFRIKVTLEQPDASVRLGMTGEVKITPADTAQGQVLM 170
              G + KGRV  V    D  S T R++   +  ++ +  G+   V++   +  Q   ++
Sbjct: 257 NEDGYSRKGRVGSVDNRLDTASGTIRVRAIFDNANSQLVPGLYARVRLGGGEPHQA--VL 314

Query: 171 LPATALFHQGGKPAVWVVTNDGKLELRPVTVAAYGERSISLSQGVATQDKVVVQGVHTLT 230
           +   A+     K  V V   D     R V V A  +  + + +G+   +++VV G+  + 
Sbjct: 315 IDEKAIGTDQDKRFVMVADKDNHANYRQVVVGAGHDGLVVIEKGLQPGERIVVNGLQRIR 374

Query: 231 VGEKVKP-VAPLH 242
            G+ + P V P+ 
Sbjct: 375 PGDAITPTVVPMQ 387


>gi|300313899|ref|YP_003777991.1| RND family efflux transporter MFP
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 95/194 (48%), Gaps = 9/194 (4%)

Query: 48  YTTLVAQHDGVISAEQANTGDVLSPG--QPVYSLAWSGAVDVVTDVADRQLAGLQPGAAA 105
           +  +VA   G+I+    + GD++ PG  + ++ L+ +  + V  +V       ++PG   
Sbjct: 203 FKRIVAPFSGIITRRNVDVGDLIDPGAGRALFVLSQTDPLRVYVNVPQSYANLVKPGQQV 262

Query: 106 EVTLAALPGKTYKGRVREVSPAADPQSRTFRIKVTLEQPDASVRLGMTGEVK--ITPADT 163
            VT + L G+ ++G+V   + A D  +R+ +++VTL   D ++  G   +V   I P+  
Sbjct: 263 TVTQSELRGRKFEGKVARTAGAIDAATRSMQVEVTLSNADHALLPGAFVQVALPIKPS-- 320

Query: 164 AQGQVLMLPATALFHQGGKPAVWVVTNDGKLELRPVTVAAYGERSISLSQGVATQDKVVV 223
             G +L+   T +F + G   V  V    ++ L+ + +     +++ +  G+   + +++
Sbjct: 321 --GALLVAADTLMFRRDGT-LVAAVDPHNQVRLKKLRLGRNFGQTVEVLDGLQGDEHLIL 377

Query: 224 QGVHTLTVGEKVKP 237
                L  G++V+P
Sbjct: 378 NPSDALAEGDQVEP 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 772,801
Number of extensions: 32354
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 4
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)