BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0010.p (1047 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein... 2004 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 228 2e-60 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 223 7e-59 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 197 5e-51 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 182 9e-47 >gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein [Herbaspirillum seropedicae SmR1] Length = 1047 Score = 2004 bits (5192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1009/1047 (96%), Positives = 1031/1047 (98%) Query: 1 MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA 60 MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA Sbjct: 1 MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA 60 Query: 61 TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK 120 TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK Sbjct: 61 TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK 120 Query: 121 VGDVAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFTPAQLRDYADQLRGELLHVPGVAK 180 VGD+AATLPQGVKGPYFNDEFGDVYTNIYALAGDGF+PAQLRDYADQLRGELLHVPGVAK Sbjct: 121 VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFSPAQLRDYADQLRGELLHVPGVAK 180 Query: 181 IDYFGERQERIYIDIGNTRMTRLGISPQQLADAIGGQNAVVPGGLITTSSDRVYVRPTGQ 240 IDYFGER E IYIDIGN RMTRLGISPQQLADAIGGQNAVVPGGLITT +DRVYVRPTGQ Sbjct: 181 IDYFGERNEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQ 240 Query: 241 FDNLRALEDKIIHVNNRNFRLGDIATITRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVI 300 FDNLRALE+KII +NNR+FRLGDIATITRGYDEPQEQ MRANGQPVLGIGVTMQPGGDVI Sbjct: 241 FDNLRALEEKIIQINNRSFRLGDIATITRGYDEPQEQAMRANGQPVLGIGVTMQPGGDVI 300 Query: 301 RLGKALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG 360 RLGKALD RTE+LRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG Sbjct: 301 RLGKALDARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG 360 Query: 361 IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE 420 IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE Sbjct: 361 IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE 420 Query: 421 QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW 480 QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW Sbjct: 421 QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW 480 Query: 481 LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC 540 LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC Sbjct: 481 LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC 540 Query: 541 VAFRGRVVIATTVLFIASLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM 600 VAFRGRVVIATTVLFI SLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM Sbjct: 541 VAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM 600 Query: 601 EALLKDRPQIDHVVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP 660 EALLKDRPQIDH VSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP Sbjct: 601 EALLKDRPQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP 660 Query: 661 LRKQFSGARTRMTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAELRKESRATNIQFD 720 LR+QFSG RTR+TRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAE+RKESRATNIQFD Sbjct: 661 LRRQFSGVRTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRKESRATNIQFD 720 Query: 721 WDEPAQRSVSFEIDQKRAGELGLSSQQIANFLAMQLSGFTVTQYRERDKLIGVDLRAPRS 780 WDEPAQRSVSFEIDQKRA +LGL+SQQI+NFLAMQLSG+T+TQYRERDKLI VDLRAPRS Sbjct: 721 WDEPAQRSVSFEIDQKRAAQLGLTSQQISNFLAMQLSGYTITQYRERDKLISVDLRAPRS 780 Query: 781 ERVDPSRLATLSMPTANGPVPLAALGQFHNTLEYGVIWERDRQPTITVLADVRAGVQGID 840 ERVDP+RLATLSMPTANGPVPLA LGQF+NTLEYGVIWER+RQPTITVLADVR GVQGID Sbjct: 781 ERVDPARLATLSMPTANGPVPLATLGQFNNTLEYGVIWERNRQPTITVLADVRPGVQGID 840 Query: 841 VTNDVNRKLDALRGELPVGYRIDVGGPVEENAKAQSSISAQMPLMIIAVLLLLMVQLQSF 900 VTNDVN+KL+ALR ELPVGYRIDVGGPVEENAKAQSSISAQMPLM+IAVLLLLMVQLQSF Sbjct: 841 VTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF 900 Query: 901 GRTLMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA 960 GRT+MVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA Sbjct: 901 GRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA 960 Query: 961 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY 1020 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY Sbjct: 961 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY 1020 Query: 1021 LPALYALCYRVKPDETHHRDHAAQGSH 1047 LPALYALCYRVKPDETHHRD AAQGSH Sbjct: 1021 LPALYALCYRVKPDETHHRDTAAQGSH 1047 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 262/1075 (24%), Positives = 467/1075 (43%), Gaps = 96/1075 (8%) Query: 22 FILALVTLL-GIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQET 80 ++LA+ +L G + + L S+ P +V+ +PGATA+ + + +T I +++ Sbjct: 13 WVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSLIEQEMNGA 72 Query: 81 PDVDFLRSYSRA-GQSQLFFTIKDTAPASQVPQTWYQVRKKVGDVAATLPQGV--KGPYF 137 + ++ S S+A GQ Q+ T +P + V+ ++ V A LP V +G Sbjct: 73 DGLQYIESQSQANGQVQITITF---SPETNPDLAAVDVQNRLKRVEARLPAAVTQQGVQV 129 Query: 138 NDEFGDVYTNIYALAGDG-FTPAQLRDY-ADQLRGELLHVPGVAKIDYFG-ERQERIYID 194 + I + DG P L DY + + E+ VPGV + FG ER RI+ID Sbjct: 130 TKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTERAMRIWID 189 Query: 195 IGNTRMTRLGISPQQLADAIGGQNAVVPGGLIT------TSSDRVYVRPTGQFDNLRALE 248 ++ L ++P + AI QNA+V GG + T V GQ + Sbjct: 190 --PNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLTSPEQFG 247 Query: 249 DKII--HVNNRNFRLGDIATITRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVIRLGKAL 306 + I+ + N RL D+A + G + + R +G+P IGV + P + + A+ Sbjct: 248 NIILRANANGATVRLRDVARVEVG-GQSYDTSGRLDGKPSSFIGVQLSPTANALGTATAV 306 Query: 307 DERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSL-GIRTGM 365 ++ E+L K P G+ T V+ S+++ ++ + EA+ +V +V + L IR + Sbjct: 307 HKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIRYTI 366 Query: 366 VVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA-VKLEQGWN 424 + I +P+ L T + LF ++ +++ +VLA+G+LVDDAI+ VE + + E+G + Sbjct: 367 IPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEEGLS 426 Query: 425 RRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIA-LLLSWLAA 483 A A + ++ TLV +A F+P+A G R F +S +A ++ S L A Sbjct: 427 PADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQ-FSLSMVASMVFSVLMA 485 Query: 484 VVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRS------- 536 L P L +LK E+ H H + + W R Sbjct: 486 FTLTPALCATILKPV------------------EKGHHHE--KKGFFGWFNRKFNSTASG 525 Query: 537 ----VAWCVAFRGRVVIATTVLFIASLAAFALVPQQFFPSSDRPELLIDLHLPERASFEA 592 + + GR +I ++ + +P F P+ D+ ++ ++ LP AS Sbjct: 526 YQGIIGGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSR 585 Query: 593 TQREAVRMEALLKDRPQIDHVV-----SFVGVG--APRFYLPL------DQQLASPNFAQ 639 T ++E P ++H + SF G G A + PL D+ ++ A Sbjct: 586 TTAVVKQIEEYYLKDPAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAG 645 Query: 640 FVVTAKSVEDREALARALEEPLRKQFSGARTRMTRLENGPPVGFP--VQFRISGEQIPKV 697 A S + ++A+ L P + A RL++ +G VQ R QI + Sbjct: 646 KAFGAFS-QIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQAR---NQILGM 701 Query: 698 RAIAEQVAAELRKESRATNIQFDWDEPAQRSVSFEIDQKRAGELGLSSQQIANFLAMQLS 757 A +V A +R E Q D ID+ +A LG+ I + L+ L Sbjct: 702 -ASQSKVLAGVRPEGLEDAPQLQLD----------IDRDKANALGVPFSTINSVLSTALG 750 Query: 758 GFTVTQYRERDKLIGVDLRAPRSERVDPSRLATLSMPTANGP-VPLAALGQFHNTLEYGV 816 V + + V ++A R+ P L L ++G VP +A Sbjct: 751 SSYVNDFPNLGRQQRVIVQADAKRRLQPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQ 810 Query: 817 IWERDRQPTITVLADVRAGVQGIDVTNDVNRKLDALRGELPVGYRIDVGGPVEENAKAQS 876 + + P + + G T + ++++ +LP G+ + G E + + Sbjct: 811 LIRYNGYPAMKIAGGAAPGRS----TGEAMAEMESFVAKLPPGFGFEWTGQSLEEKTSGN 866 Query: 877 SISAQMPLMIIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGT 936 A L +IAV L+L +S L V++ PLG++G + + L P +G Sbjct: 867 QAPALYALSLIAVFLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGM 926 Query: 937 IAMLGIIMRNSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRS 996 IA++G+ +N++++++ + A G+G +A + A RFRPI +T+ A +L ++PL + Sbjct: 927 IAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIA 986 Query: 997 NFFGP-----MATALMGGITIATILTLFYLPALYALCYRVKPDETHHRDHAAQGS 1046 + G + T +MGG+ AT+L +F +P + + ++ R A+ S Sbjct: 987 SGAGSASQRAIGTGVMGGMITATVLAVFLVPIFFVVVRKIFKGSERQRKFDAEHS 1041 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 223 bits (568), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 257/1040 (24%), Positives = 443/1040 (42%), Gaps = 73/1040 (7%) Query: 26 LVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQETPDVDF 85 + L G+ + S+L + P + I +PGAT + + + + I R+L ++ + Sbjct: 18 FIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVISLIERELSGVKNLLY 77 Query: 86 LRSYS-RAGQSQLFFTIKDTAPASQVPQTWYQVRKKVGDVAATLPQGVK--GPYFNDEFG 142 S + +G +Q+ T K P + V+ K+ + A LPQ V+ G Sbjct: 78 FESSADTSGTAQISVTFK---PGTDPELAQVDVQNKLKAIEARLPQTVRQNGVTVESAAS 134 Query: 143 DVYTNIYALAGDG-FTPAQLRDY-ADQLRGELLHVPGVAKIDYFGERQE-RIYIDIGNTR 199 + + DG + +L DY A + EL + GV ++ FG Q RI++D + Sbjct: 135 SFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGAEQAMRIWLD--PFK 192 Query: 200 MTRLGISPQQLADAIGGQNA-VVPGGLITTSSDR-----VYVRPTGQFDNLRALEDKIIH 253 + G++ ++ AI QNA + PG L + R + + GQ + ++ Sbjct: 193 LNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQSPAQFAAIVLK 252 Query: 254 VNNRNFR--LGDIATITRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVIRLGKALDERTE 311 R LGD+A + G + R NG+P V + PG + +R A+ R E Sbjct: 253 AKADGSRVLLGDVARVELG-AQSYAFANRENGKPAGVAAVQLSPGANAVRTAAAIQARME 311 Query: 312 QLRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSL-GIRTGMVVVIS 370 +LR LP G+ + + V+ S+ ++ + EA+ +V +V + L +R ++ I Sbjct: 312 ELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQNVRYTVIPAIV 371 Query: 371 IPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA-VKLEQGWNRRRAA 429 PI L T M L ++ +++ +VLA+G++VDDAI+ VE + + +G R A Sbjct: 372 APIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMAHEGLGPREAT 431 Query: 430 AFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSWLAAVVLIPL 489 A ++ TLV A F+P+ALA G R A+++L S A+ L P Sbjct: 432 IKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSAFLALSLTPA 491 Query: 490 LGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWCVAFRGRVVI 549 L +L+ P AGH HD + R A + GR++ Sbjct: 492 LCATLLRPVP-------------AGH----HDKRGFFGAFNRAFNRLTARYESALGRLIA 534 Query: 550 --ATTVLFIASLAAFALV-----PQQFFPSSDRPELLIDLHLPERASFEATQREAVRMEA 602 +L A+L+ +V P F P D+ + LP A+ E T R + E Sbjct: 535 RGLRMMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFER 594 Query: 603 LLKDRPQIDHVVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALAR--ALEEP 660 LK R I +S +G G + PN A K ++R+ Sbjct: 595 YLKGREDIGANLSVLGFGFSG---------SGPNAAMAFTELKDWKERKGSTSAAEAMAA 645 Query: 661 LRKQFSGARTRMTRL------ENGPPVGFPVQFRISGEQIPKVRAIAEQVAAELRKESRA 714 SG + L E G GF ++ + Q AE L +SR Sbjct: 646 QAAMESGVDGMVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRK 705 Query: 715 TNIQFDWDEPAQRSVSFEIDQKRAGELGLSSQQIANFLAMQLSGFTVTQYRERDKLIGVD 774 + + PA SV EID+ +A LG+S I++ L+ + F V + ++ V Sbjct: 706 LSGVYSDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVI 765 Query: 775 LRAPRSERVDPSRLATLSMPT-ANGPVPLAALGQFHNTLEYGVIWERDRQPTITVLADVR 833 L+A S R+ + L + + G VPLA L + + P + + Sbjct: 766 LQAQASARMQLEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAA 825 Query: 834 AGVQGIDVTNDVNRKLDALRGELPVGYRIDVGGPVEENAKAQSSISAQMPLMIIAVLLLL 893 GV + ++ R L +LP G+ + G + + + M L ++ V L+L Sbjct: 826 PGVASGEAMAEMER----LAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVL 881 Query: 894 MVQLQSFGRTLMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQ 953 +S+ L V++ PLGL+G V A++L P +G I ++G+ +N++++V+ Sbjct: 882 AALYESWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEF 941 Query: 954 IEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFG-----PMATALMG 1008 Q + G G +A + A+V R RPI +T+ A L ++PL+ ++ + T + G Sbjct: 942 ARQLRSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFG 1001 Query: 1009 GITIATILTLFYLPALYALC 1028 G+ AT+L + ++P + L Sbjct: 1002 GMVSATVLAVLFVPVFFVLV 1021 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 197 bits (500), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 255/1092 (23%), Positives = 466/1092 (42%), Gaps = 120/1092 (10%) Query: 19 LVTFILALVTLLG-IGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKL 77 + +++A++ +LG + S LS + P + I+ + GA+A+ +++ +T I +++ Sbjct: 10 IFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQVIEQQM 69 Query: 78 QETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQT-WYQVRKKVGDVAATLPQGVK--G 134 + +D L+ S + S T+ T A P QV+ K+ V A LPQ V+ G Sbjct: 70 K---GLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQNNG 126 Query: 135 PYFNDEFGDVYTNIYALAGDG--FTPAQLRDY-ADQLRGELLHVPGVAKIDYFGERQE-R 190 D+ + +L D T + D+ + L ++ V GV + FG R Sbjct: 127 VTVTKASTDILM-VLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGTNYAMR 185 Query: 191 IYIDIGNTRMTRLGISPQQLADAIGGQNAVVPGGLI------------TTSSDRVYVRPT 238 I+ID ++ + + P + A+ QN V G I T + R + Sbjct: 186 IWID--PAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLTTP 243 Query: 239 GQFDNLRALEDKIIHVNNRNFRLGDIATITRGYDEPQEQEMRANGQPVLGIGVTMQPGGD 298 +F N+ V+ +L D+A + G E + + NG+P + + + G + Sbjct: 244 DEFRNIIVKS----SVDGSVVKLSDVARVELG-GESYQVASQQNGKPSSALAIQLATGAN 298 Query: 299 VIRLGKALDERTEQLRKRLPAGLTLT---AVSSMPHAVEKSVDDFLEAVAEAVA-IVLVV 354 + A+ ++ +L PA + L A + P V S+++ ++ + EA+ +VL++ Sbjct: 299 ALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPF-VRVSLEEVVKTLIEAIVLVVLIM 357 Query: 355 SLVSLGIRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEM 414 L IR + I++P+VL T + +F ++ +++ +VLA+GLLVDDAI+ VE Sbjct: 358 YLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVE- 416 Query: 415 MAVKLEQGWNRRRAAAFAYTSTAFPMLTGTLVTVAG-----FLPIALAKSGTGEYTR--S 467 +E+ + + + T + +TG LV +A F+P+A TG R S Sbjct: 417 ---NVERLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFS 473 Query: 468 IFEVSAIALLLSWLAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQT 527 I VSA+A LS + A+ L P L +LK PHAG + Q Sbjct: 474 ITIVSAMA--LSVMVALTLTPALCATLLK--------------PHAGGH-------VQQG 510 Query: 528 RIYTWLRRS-----------VAWCVAFRGRVVIATTVLFIASLAAFALVPQQFFPSSDRP 576 R +TW RS VA + R ++ ++ +A F +P F P D+ Sbjct: 511 RFFTWFNRSFDRSATRYQGGVAGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQG 570 Query: 577 ELLIDLHLPERASFEATQREAVRMEALLKDRPQ-IDHVVSFVGVGAPRFYLPLDQQLASP 635 L+ + LP A+ E T ++ ++P+ ++ V++ VG G S Sbjct: 571 VLMAQIQLPTGATAEQTATVVKTVQEYFMNKPESVESVLAIVGAGVGG---------NSQ 621 Query: 636 NFAQFVVTAKSVEDREALARALEEPLRK---QFSGARTRMTRLENGPPV-------GFPV 685 N A+ + K E R ++ E +R+ S R L N P V GF + Sbjct: 622 NGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGARVFLMNPPAVRGLGQSSGFDL 681 Query: 686 QFR-ISGEQIPKVRAIAEQVAAELRKESRATNIQFD-WDEPAQRSVSFEIDQKRAGELGL 743 + + + G + +Q R + N++ D+ Q V+ ID ++A L + Sbjct: 682 ELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLDDTPQLRVA--IDDRKADALSI 739 Query: 744 SSQQIANFLAMQLSGFTVTQYRERDKLIGVDLRAPRSERVDPSRLATLSMPTANGP-VPL 802 ++ I LA + G V + ++ V ++ + R+ L + A VP Sbjct: 740 ATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQADDLNRWYVRNAASQMVPF 799 Query: 803 AALGQFHNTLEYGVIWERDRQPTITVLADVRAGVQGIDVTNDVNRKLDALRGELPVGYRI 862 AA T ++ + + ++ + AGV +V + L +LP G Sbjct: 800 AAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEVEK----LVAQLPAGIGF 855 Query: 863 DVGGPVEENAKAQSSISAQMPLMIIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVGALL 922 + G + + + + I+ V L L +S+ V++ PLG+IG V Sbjct: 856 EWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIGTVLLTG 915 Query: 923 LFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLT 982 +FG +G + +G+ +N++++V+ +Q +G+ ++A + A R RPI +T Sbjct: 916 IFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEATLEAVQLRLRPILMT 975 Query: 983 AAAAVLALIPLLRSNFFGP-----MATALMGGITIATILTLFYLPALYALC-----YRVK 1032 + A + ++PL ++ G + T ++GG+ AT+L +F++P Y L R Sbjct: 976 SLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLFYYLIGAWLDRRAA 1035 Query: 1033 PDETHHRDHAAQ 1044 DHA Q Sbjct: 1036 RKPRQDDDHAMQ 1047 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 182 bits (463), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 255/1084 (23%), Positives = 463/1084 (42%), Gaps = 99/1084 (9%) Query: 19 LVTFILALVTLL-GIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKL 77 + ++LA++ +L GI S L ++ P + I ++PGA+A+ +++ +T I +K+ Sbjct: 10 IFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDTVTQIIEQKM 69 Query: 78 QETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQT-WYQVRKKVGDVAATLPQGVKGPY 136 + + ++ S S + S TI T P T QV+ K+ LP V+ Sbjct: 70 KGLDRLSYMASTSESSGS---VTITLTFENGTNPDTAQVQVQNKLSLATPLLPSEVQQQG 126 Query: 137 FN-DEFGDVYTNIYALAG-DG-FTPAQLRDY-ADQLRGELLHVPGVAKIDYFGERQE-RI 191 + + N+ A DG + + L DY A ++ + V GV FG + RI Sbjct: 127 ITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGSQYAMRI 186 Query: 192 YIDIGNTRMTRLGISPQQLADAIGGQNAVVPGGLI------------TTSSDRVYVRPTG 239 ++D ++ G++P + +AI QNA V G + T + + +R Sbjct: 187 WLD--PNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRLRTAD 244 Query: 240 QFDN--LRALEDKIIHVNNRNFRLGDIATITRGYDEPQEQEMRANGQPVLGIGVTMQPGG 297 QF N LR L +L D+A I G E R NG+P G+ + + G Sbjct: 245 QFQNIVLRTL------TGGAQVKLRDVARIELG-SESYTSVGRYNGKPAAGLAIKLATGA 297 Query: 298 DVIRLGKALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLV 357 + + KA+D+R +L K P G+ + V S+++ + + EAV +V +V + Sbjct: 298 NALDTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYL 357 Query: 358 SL-GIRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA 416 L R ++ I++P+VL T + +F ++ +++ +VLA+GLLVDDAI+ VE + Sbjct: 358 FLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVE 417 Query: 417 -VKLEQGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIA 475 V E+G ++A + + ++ LV A F+P+A TG R A Sbjct: 418 RVMSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSA 477 Query: 476 LLLSWLAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAG--HDEEDHDHPIYQTRIYTWL 533 + LS L A+VL P L +LK A +A G + + D + YQ + L Sbjct: 478 MTLSVLVALVLTPALCATLLKP---AAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHML 534 Query: 534 RRSVAWCVAFRGRVVIATTVLFIASLAAFALVPQQFFPSSDRPELLIDLHLPERASFEAT 593 R W R + A VL +A F +P F P D+ L + LP A+ +A Sbjct: 535 GR--GW------RYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGAT-KAR 585 Query: 594 QREAVR---MEALLKDRPQIDHV-----VSFVGVGAPRFYL-----PLDQQLASPNFAQF 640 E +R L+ + + V SF G G + P D++ P Sbjct: 586 TDEVIRQVEQHFLVDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDER-KGPGL--- 641 Query: 641 VVTAKSVEDREALARALEEPLR--KQFSGARTRMTRLENGPPVGFPVQFR----ISGEQI 694 SV D A A A +R + F+ A ++ L N GF + + + + Sbjct: 642 -----SVTDVAAKAGAAFANIRDARVFAFAPPAVSELGNA--TGFDLMLKDEANLGHAAL 694 Query: 695 PKVRAIAEQVAAELRKESRATNIQFDW--DEPAQRSVSFEIDQKRAGELGLSSQQIANFL 752 + R Q+ EL ++ R ++ + D P R +D +AG LG++ I + + Sbjct: 695 MQAR---NQLLGELMQDKRLVAVRPNGLEDTPEFR---LSVDTDKAGALGVAMSDINDTI 748 Query: 753 AMQLSGFTVTQYRERDKLIGVDLRAPRSERVDPSRLATLSMPTANGP-VPLAALGQFHNT 811 A V + ++ ++ V L+ R+ PS + + + G VP +A T Sbjct: 749 ATAWGSSYVNDFIDKGRVKKVMLQGDAQYRMLPSDVDRWYVRNSAGTMVPFSAFSTASWT 808 Query: 812 LEYGVIWERDRQPTITVLADVRAGVQGIDVTNDVNRKLDALRGELPVGYRIDVGGPVEEN 871 + + P++ +L + G + + ++A ++P G + G + Sbjct: 809 SGSPRLERYNGVPSMEILG---MALPGAASSGEAMAIVEAALAKMPPGIGYEWTGLSLQE 865 Query: 872 AKAQSSISAQMPLMIIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVGALLLFGQPFGFV 931 + + I+ V L L +S+ V++ PLG+ G + +L + Sbjct: 866 KASSGKTGILYGVSILIVFLALAALYESWAVPFSVILVVPLGVFGALLGAMLTWKMNDVY 925 Query: 932 AMLGTIAMLGIIMRNSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALI 991 +G + +G+ +N++++V+ + G+ +A + A R RPI +T+ A +L ++ Sbjct: 926 FQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVEATMEAVRMRLRPILMTSLAFILGVL 985 Query: 992 PLLRSNFFG-----PMATALMGGITIATILTLFYLPALYALCYRV---KPDETHHRDHAA 1043 P++ + G + TA++GG+ T+L +F++P + + + KP + A Sbjct: 986 PMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFVPLFFVIIMTLFGRKPADAPQGQPAI 1045 Query: 1044 QGSH 1047 H Sbjct: 1046 SPEH 1049 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,953,328 Number of extensions: 120574 Number of successful extensions: 514 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 444 Number of HSP's successfully gapped: 12 Length of query: 1047 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 952 Effective length of database: 1,170,045 Effective search space: 1113882840 Effective search space used: 1113882840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)