BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0006.p (245 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease ... 491 e-140 gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease ... 119 3e-28 gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease ... 97 1e-21 gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease ... 93 2e-20 gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC tra... 92 3e-20 >gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 491 bits (1264), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/242 (99%), Positives = 241/242 (99%) Query: 1 MFPMPIEKWKPINRALYRASLPVALLIWLLPMLTALVTSIRSNDELMAGNYWGWPQDFAM 60 MFPMPIEKWKPINRALYRASLPVALLIWLLPML ALVTSIRSNDELMAGNYWGWPQDFAM Sbjct: 1 MFPMPIEKWKPINRALYRASLPVALLIWLLPMLAALVTSIRSNDELMAGNYWGWPQDFAM 60 Query: 61 LENYREALTASPMLHYFWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVAC 120 LENYREALTASPMLHYFWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVAC Sbjct: 61 LENYREALTASPMLHYFWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVAC 120 Query: 121 NFVPQQILMIPVRDLSLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAAR 180 NFVPQQILMIPVRDLSLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAAR Sbjct: 121 NFVPQQILMIPVRDLSLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAAR 180 Query: 181 IEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALR 240 IEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALR Sbjct: 181 IEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALR 240 Query: 241 GQ 242 GQ Sbjct: 241 GQ 242 >gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 300 Score = 119 bits (297), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 14/224 (6%) Query: 26 LIWLLPMLTALVTSIRSNDELMAGNYWGWPQDFAMLENYREALTASPMLHYFWNSCLITI 85 +I L P+ L+ S+++ + + G + +++ L + L YF NS +T+ Sbjct: 44 VIALFPIALILINSVKTRNAIFEGPMALPTAETLTFAGFQKVLAGTHFLLYFGNSLAVTV 103 Query: 86 PSVIGAISLAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPVR-------DLSLS 138 ++ + AMA +AL+ Y+F GN A NF +MIP+R L ++ Sbjct: 104 AALFLIVLFGAMAAWALTEYRFFGNR-------ALNFFIAIGIMIPIRLGTVSILQLVVA 156 Query: 139 LGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLI 198 L L NT T ++L + A + L F++Q+P E+ +AAR +G E ++F+R++LPL+ Sbjct: 157 LDLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAARCDGVGELSIFFRVILPLL 216 Query: 199 RPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRGQ 242 RPA+A +AV WND ++ L+L G+D +T+GV GQ Sbjct: 217 RPAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLGVQQFIGQ 260 >gi|300312637|ref|YP_003776729.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 107/204 (52%), Gaps = 6/204 (2%) Query: 36 LVTSIRSNDELMA--GN-YWGWPQDFAMLENYREALTASPMLHYFWNSCLITIPSVIGAI 92 ++T+ + ++EL++ GN +W A ++++ L + + N+ ++++ S ++ Sbjct: 46 VITAFKPDNELLSQSGNPFWVIAPTLA---HFKKLLFDTQYPAWLLNTVIVSVVSTFASL 102 Query: 93 SLAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPVRDLSLSLGLFNTITGMMLFH 152 + + A +A+ +F+G+ + +P IL IP+ + LGLF+T ++L + Sbjct: 103 AASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTY 162 Query: 153 IAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLIRPALAALAVLVFTF 212 FCT L + + +P+E+ E A I+GA+ W + +I+LPL P L + + FT Sbjct: 163 PTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTL 222 Query: 213 VWNDYFWALVLTQGDDVAPITVGV 236 WN++ +AL +V + VG+ Sbjct: 223 SWNEFIYALTFISSSEVKTVPVGI 246 >gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 276 Score = 92.8 bits (229), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 2/176 (1%) Query: 61 LENYREALTASPMLHYFWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVAC 120 L+N+ A A+P YF N+ L+ + + LA +A +A + + FRG+ V+F + Sbjct: 56 LQNFVNAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQ 115 Query: 121 NFVPQQILMIPVRDLSLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAAR 180 V IL++ LGL +TI + L + A + F LR K +P E+ EAA Sbjct: 116 LMVMPDILIVENYQTMNLLGLRDTILSIGLPYFA--SAFGIFLLRQTFKTVPRELDEAAT 173 Query: 181 IEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGV 236 +EGAS W + ++ +PL RP A ++ + WN++ W L++T + P+TVG+ Sbjct: 174 VEGASAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGL 229 >gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 92.4 bits (228), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 9/216 (4%) Query: 31 PMLTALVTSIRSNDE-------LMAGNYWGWPQDFAMLENYREALTASPMLHYFWNSCLI 83 P+ A V S +S ++ L G + + + +TA P+LH W S Sbjct: 26 PLYVAFVASTQSAEQSALSPLSLAPGGEFMNNYSTVLFKGAAGQVTAPPVLHMLWVSLAT 85 Query: 84 TIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPVRDLSLSLGLFN 143 + IG IS++ ++ FA+ ++F G + F +P ++ + P + LG+ N Sbjct: 86 ALIIAIGKISISMLSAFAIVYFRFPGRGLFFWMIFVTLMLPVEVRITPTYQVVSDLGMLN 145 Query: 144 TITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLIRPALA 203 + G+ + IA T T R F +P E+ EAARI+GA ++ PL R + Sbjct: 146 SYAGLSVPLIASAT--ATFLFRQFFLTVPDELAEAARIDGAGPLRFLKDVLWPLSRTNVI 203 Query: 204 ALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAAL 239 AL V++F + WN Y W L++ + PI +G+ L Sbjct: 204 ALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTL 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.140 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 700,776 Number of extensions: 24284 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 10 Length of query: 245 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 162 Effective length of database: 1,226,865 Effective search space: 198752130 Effective search space used: 198752130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)