BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0002.p (404 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 665 0.0 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 361 e-101 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 345 5e-96 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 336 2e-93 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 306 2e-84 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/345 (94%), Positives = 333/345 (96%) Query: 1 MASISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MASI+LRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGAPMELYHHPRNRFVA 240 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVG PMELYHHPRNRFVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 241 GFIGSPRMNFLPAQVVNAQENGILIRLQHSEETLLVAAKGQVQPGQQVTLGVRPEHMEIG 300 GFIGSPRMNFLPAQV QENGIL+RL SEETLLVAA+G +QPGQ VT+GVRPEHMEIG Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIG 300 Query: 301 SQGQYGITREVMLVERLGEQTYVHLDEPAGQPLVAKAPGDAHIAR 345 SQGQYGI REV+LVERLGEQTYVHLDEPAGQPLVAKA GDA I R Sbjct: 301 SQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITR 345 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 361 bits (926), Expect = e-101, Method: Compositional matrix adjust. Identities = 191/379 (50%), Positives = 255/379 (67%), Gaps = 28/379 (7%) Query: 1 MASISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MA++S+R K Y D V+R+++L+I + EF VF+GPSGCGKSTLLR IAGLE+++ GD Sbjct: 1 MAAVSIRNLAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 L IG +R+N+VP+++R VAMVFQSYAL+PHM++Y+NM+FGL +A KAEI+ V+ AA+ Sbjct: 60 LDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 IL ++ LL RKP+ LSGGQRQRVAIGRAI R+P VFLFDEPLSNLDA LR + R+E A+L Sbjct: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGAPMELYHHPRNRFVA 240 H + +++YVTHDQ+EAMTLAD+IV+L G I QVG+P +LYHHP NRFVA Sbjct: 180 HDDL-KTTMIYVTHDQIEAMTLADKIVVLSE-------GRIEQVGSPQQLYHHPANRFVA 231 Query: 241 GFIGSPRMNFLPAQVVNAQENGILIRLQHSEETLLVAAKGQVQPGQQVTLGVRPEHMEIG 300 GFIGSP+MNF+ V Q +G+ ++L +Q GQ+VTLGVRPEH+ I Sbjct: 232 GFIGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNI- 290 Query: 301 SQGQYGITREVMLVERLGEQTYVH-----------------LDEPAGQPL-VAKAPGDAH 342 +QGQ + +E LG+ +Y++ LD P G L +A P H Sbjct: 291 AQGQAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCH 350 Query: 343 IARARARARARAXRARRAP 361 + A +A R + AP Sbjct: 351 LFGADGQALPRLASSVAAP 369 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 345 bits (884), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 175/343 (51%), Positives = 236/343 (68%), Gaps = 8/343 (2%) Query: 1 MASISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MA ++++ +K Y V+ ++LDI + EFCV +GPSGCGKSTLLR + GLE+++ G+ Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 L IGG+ VN +P A+R +AMVFQSYAL+PHM VY+NM+FGL +A K++I+ ++R AA Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 IL+++ LLQR P+ELSGGQRQRVAIGRAIVR+P +FLFDEPLSNLDA LR QTR+EIA+L Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGAPMELYHHPRNRFVA 240 HRQ A++VYVTHDQVEAMTL D+IV++H G I Q G P+ELY P+N FVA Sbjct: 181 HRQLA-ATIVYVTHDQVEAMTLGDKIVVMHE-------GRIQQAGTPLELYQQPQNLFVA 232 Query: 241 GFIGSPRMNFLPAQVVNAQENGILIRLQHSEETLLVAAKGQVQPGQQVTLGVRPEHMEIG 300 GFIGSP+MNF V ++G+ + + L V PG VTLG+R E + G Sbjct: 233 GFIGSPKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREG 292 Query: 301 SQGQYGITREVMLVERLGEQTYVHLDEPAGQPLVAKAPGDAHI 343 + V LVE LGE ++++ G +V + G+ ++ Sbjct: 293 LGDGQPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNV 335 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 336 bits (862), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 177/326 (54%), Positives = 234/326 (71%), Gaps = 16/326 (4%) Query: 1 MASISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MAS+ +RA +K +G + +IR VD+DI + EF V +GPSGCGKSTLLR +AGLE++T G+ Sbjct: 1 MASVQIRAVKKQFG-STQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 + IGG VN+V R +AMVFQ+YAL+PHMTV +NM+F LTLAK KA ++++V++AA Sbjct: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAAD 119 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 IL L +LL R P++LSGGQRQRVA+GRAIVR P VFLFDEPLSNLDA LR Q R EI L Sbjct: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGAPMELYHHPRNRFVA 240 H++ + S +YVTHDQ+EAMT+AD+IV++ R G + Q G P++LY +P N FVA Sbjct: 180 HQRLKTTS-IYVTHDQIEAMTMADQIVVM-------RDGLVEQRGRPLDLYDYPANLFVA 231 Query: 241 GFIGSPRMNFLPAQVVNAQENGILIRLQHSEETLLVAAKG---QVQPGQQVTLGVRPEHM 297 GFIGSP MNF+PA + + N ++ ++ T + A G Q GQ+VT GVRPEH+ Sbjct: 232 GFIGSPAMNFIPATL---RRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHL 288 Query: 298 EIGSQGQYGITREVMLVERLGEQTYV 323 IG+ GQ GI +V++VE G T V Sbjct: 289 SIGAAGQ-GIATKVIVVEPTGADTEV 313 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 306 bits (783), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 173/344 (50%), Positives = 223/344 (64%), Gaps = 14/344 (4%) Query: 1 MASISLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 MA I +A K Y PPV+ +DL IG+ EF V LGPSGCGKST+LR IAGLED++ G Sbjct: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 Query: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 L IGG VND+P+ +R+VAMVFQ+YAL+PHM+VY+N++FGL K P AEI+++VRE A Sbjct: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 Query: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 +L LE LL+RKP+ +SGGQ+QR AI RAI++ P VFLFDEPLSNLDA LR+Q R +I RL Sbjct: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGAPMELYHHPRNRFVA 240 H++ + + VYVTHDQ+EAMTLADR++L+ G I Q G+P ELY +PRN F A Sbjct: 181 HQRL-RTTTVYVTHDQLEAMTLADRVILMQD-------GRIVQAGSPAELYRYPRNLFAA 232 Query: 241 GFIGSPRMNFLPAQVVNAQENGILIRLQHSEETLLVAAKGQVQPGQQVTLGVRPEHMEIG 300 GFIG+P MNFL + V Q+ + I H L +++ V L VRP+H+ I Sbjct: 233 GFIGTPAMNFL-SGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRIA 291 Query: 301 SQ----GQYGITREVMLVERLGEQTYVHLDEPAGQPLVAKAPGD 340 + V LVE LG + Q L A P D Sbjct: 292 GEREPAASLTCPVSVELVEILGADALL-TTRCGDQTLTALVPAD 334 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,193,339 Number of extensions: 48339 Number of successful extensions: 608 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 353 Number of HSP's successfully gapped: 139 Length of query: 404 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 317 Effective length of database: 1,207,925 Effective search space: 382912225 Effective search space used: 382912225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)