BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0018.0001.p
         (87 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp...   134   1e-33
gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H...    91   2e-20
gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H...    89   5e-20
gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra...    82   1e-17
gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H...    81   2e-17

>gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  134 bits (337), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 72/86 (83%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR
Sbjct: 71  VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 130

Query: 61  KPKELSALAQDVGHCGRGDTGQTGNF 86
           KPKELS   +     GR    + G F
Sbjct: 131 KPKELSGGQRQRVAIGRAIVRRPGVF 156


>gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score = 90.5 bits (223), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 60/86 (69%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           VP+++R VAMVFQSYAL+PHM++Y+NM+FGL +A   KAEI+  V+ AA+IL ++ LL R
Sbjct: 70  VPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKILHIDHLLDR 129

Query: 61  KPKELSALAQDVGHCGRGDTGQTGNF 86
           KP+ LS   +     GR  T Q   F
Sbjct: 130 KPRALSGGQRQRVAIGRAITRQPSVF 155


>gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score = 89.4 bits (220), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 54/67 (80%)

Query: 1   VPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQR 60
           +P A+R +AMVFQSYAL+PHM VY+NM+FGL +A   K++I+ ++R AA IL+++ LLQR
Sbjct: 71  LPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAAILKIDHLLQR 130

Query: 61  KPKELSA 67
            P+ELS 
Sbjct: 131 LPRELSG 137


>gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score = 81.6 bits (200), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 51/62 (82%)

Query: 5   QRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQRKPKE 64
           +R +AMVFQ+YAL+PHMTVY+NM++GL +  L K+EI+ +V+ AA IL+L  LL+R P++
Sbjct: 78  ERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAAAILELGALLERTPRQ 137

Query: 65  LS 66
           LS
Sbjct: 138 LS 139


>gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 361

 Score = 81.3 bits (199), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 5   QRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQRKPKE 64
            R +AMVFQ+YAL+PHMTV +NM+F LTLAK  KA ++++V++AA IL L +LL R P++
Sbjct: 74  DRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILGLNQLLDRYPRQ 133

Query: 65  LSA 67
           LS 
Sbjct: 134 LSG 136


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 249,883
Number of extensions: 7992
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 13
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 13
Length of query: 87
Length of database: 1,619,870
Length adjustment: 57
Effective length of query: 30
Effective length of database: 1,349,975
Effective search space: 40499250
Effective search space used: 40499250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)