BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0043.p (135 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 250 4e-68 gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 236 4e-64 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 208 1e-55 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 164 2e-42 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 80 5e-17 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 250 bits (638), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 123/135 (91%), Positives = 128/135 (94%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDW 60 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTK+VEADDGSSALKILEAGALPVTFVLTDW Sbjct: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDW 60 Query: 61 NMPGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKE 120 NMP MDGLTLLK+IR TPS+AHLPVLMITAEAKKENIV AAQSGADGYIVKPF AATLK+ Sbjct: 61 NMPVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKD 120 Query: 121 KIEKILARRATMVSA 135 KIEKILARRA + A Sbjct: 121 KIEKILARRAHLAKA 135 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 236 bits (602), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 115/132 (87%), Positives = 123/132 (93%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDW 60 MAA +Q+FLVVDDFSTMRRIVSGLLKELEYTK+VEADDGSSALKILE+GA +TFVLTDW Sbjct: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 Query: 61 NMPGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKE 120 NMP MDGLTLLK+IR TP+L+HLPVLMITAEAKKENIVMAAQ GADGYIVKPF A TLKE Sbjct: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 Query: 121 KIEKILARRATM 132 KIEKILARRA M Sbjct: 121 KIEKILARRAHM 132 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 208 bits (530), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 97/128 (75%), Positives = 115/128 (89%) Query: 5 DQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDWNMPG 64 DQ+FLVVDDFSTMRRI+ GLLKELEY K+ +ADDG+SA KILE+GALP++FV+TDWNMPG Sbjct: 4 DQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMPG 63 Query: 65 MDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKEKIEK 124 MDGL LLK+IR TP L LPVLM++AEAKKENIV+AA++GADGYIVKPF AATL +KI K Sbjct: 64 MDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISK 123 Query: 125 ILARRATM 132 IL RR++M Sbjct: 124 ILQRRSSM 131 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 164 bits (415), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 82/130 (63%), Positives = 100/130 (76%), Gaps = 2/130 (1%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDW 60 M+ + FLVVDDFSTMRRIV LLKEL YT + EA+DG AL+ L + FV++DW Sbjct: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQF--DFVVSDW 58 Query: 61 NMPGMDGLTLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKE 120 NMP MDGLT+L+ IR P+L+ LPVLM+TAEAKKENIV AAQ+GA+GY+VKPFTAATL E Sbjct: 59 NMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDE 118 Query: 121 KIEKILARRA 130 K+ KI + A Sbjct: 119 KLGKIFEKMA 128 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 80.1 bits (196), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 9 LVVDDFSTMRRIVSGLLKELEYTKMVEADDGSSALKILEAGALPVTFVLTDWNMPGMDGL 68 L VDD ++R++V LK Y + EA DG AL+ +A + VLTD NMP MDGL Sbjct: 6 LAVDDSGSLRQMVVFSLKAAGYN-VTEAVDGVDALE--KAKSQTFDLVLTDQNMPRMDGL 62 Query: 69 TLLKRIRVTPSLAHLPVLMITAEAKKENIVMAAQSGADGYIVKPFTAATLKEKIEKILA 127 TL++ +R S A +P+LM+T E E +GA+G++VKPF L E + K++ Sbjct: 63 TLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG 121 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 378,622 Number of extensions: 13715 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 28 Length of query: 135 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 59 Effective length of database: 1,260,010 Effective search space: 74340590 Effective search space used: 74340590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)