BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0042.p
         (635 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase [Herba...  1316   0.0  

>gi|300311294|ref|YP_003775386.1| threonyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 635

 Score = 1316 bits (3405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/635 (99%), Positives = 633/635 (99%)

Query: 1   MVSVRLPDGSQRQFDNPVTVAQVAANIGTGLAKAALAGRVDGKLVDTSYLIDKDADLAII 60
           MVSVRLPDGSQRQFDNPVTVAQVAANIGTGLAKAALAGRVDGKLVDTSYLIDKDA+L+II
Sbjct: 1   MVSVRLPDGSQRQFDNPVTVAQVAANIGTGLAKAALAGRVDGKLVDTSYLIDKDAELSII 60

Query: 61  TDKDPDGLEVIRHSTAHLLAYAVKELFPEAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAI 120
           TDKD DGLEVIRHSTAHLLAYAVKELFPEAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAI
Sbjct: 61  TDKDADGLEVIRHSTAHLLAYAVKELFPEAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAI 120

Query: 121 EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGEAYKAEIIASIPQNEDVSLYTEGSFTDL 180
           EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGE YKAEIIASIPQNEDVSLYTEGSFTDL
Sbjct: 121 EKKMAELAKKDEPVTRKVLPRDEAVAYFKSIGEDYKAEIIASIPQNEDVSLYTEGSFTDL 180

Query: 181 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQEAYLHMLEEAEK 240
           CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQEAYLHMLEEAEK
Sbjct: 181 CRGPHVPSTGKLKVFKLMKLAGAYWRGDSNNEMLQRVYGTAWAKKEDQEAYLHMLEEAEK 240

Query: 241 RDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQDNGYQEVKAPQILDR 300
           RDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQDNGYQEVKAPQILDR
Sbjct: 241 RDHRKLGRALDLFHFQDEAPGLIFWHPKGWTIWQQVEQYMRRVYQDNGYQEVKAPQILDR 300

Query: 301 SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQIFNSGLHSYRDLPLRYGEFGQC 360
           SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQIFNSGLHSYRDLPLRYGEFGQC
Sbjct: 301 SLWEKTGHWENYRENMFTTESENRAYALKPMNCPGHIQIFNSGLHSYRDLPLRYGEFGQC 360

Query: 361 HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQEEVAAFNRVVREVYDCFGFKEVAVKLA 420
           HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQEEVAAFNRVVREVYDCFGFKEVAVKLA
Sbjct: 361 HRNEPSGALHGMMRVRGFTQDDGHIFCTEDQIQEEVAAFNRVVREVYDCFGFKEVAVKLA 420

Query: 421 LRPEKRIGAEEVWDKAENALREAIRASGSEWEELPGEGAFYGPKIEYHLKDSIGRSWQCG 480
           LRPEKRIGAEEVWDKAENALREAIRASGSEWEELPGEGAFYGPKIEYHLKDSIGRSWQCG
Sbjct: 421 LRPEKRIGAEEVWDKAENALREAIRASGSEWEELPGEGAFYGPKIEYHLKDSIGRSWQCG 480

Query: 481 TMQVDFSMPARLGAEYVTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPTQ 540
           TMQVDFSMPARLGAEYVTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPTQ
Sbjct: 481 TMQVDFSMPARLGAEYVTEDNNRKVPVMLHRAIVGSLERFIAILIENHAGAMPLWLAPTQ 540

Query: 541 VVILNISDAQADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKER 600
           VVILNISDAQADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKER
Sbjct: 541 VVILNISDAQADYVQNVAQTLKKQGFRVETDLRNEKITYKIRQHSIQKPPYILVVGDKER 600

Query: 601 DANTVAVRARGNVDLGVMSIDTLVERLKDEVAAKA 635
           DANTVAVRARGNVDLGVMSIDTLVERLKDEVAAKA
Sbjct: 601 DANTVAVRARGNVDLGVMSIDTLVERLKDEVAAKA 635


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,038,618
Number of extensions: 88187
Number of successful extensions: 251
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 544
Effective length of database: 1,188,985
Effective search space: 646807840
Effective search space used: 646807840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)