BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0037.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase be...   711   0.0  

>gi|300311299|ref|YP_003775391.1| phenylalanyl-tRNA synthetase beta
           chain protein [Herbaspirillum seropedicae SmR1]
          Length = 808

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/384 (93%), Positives = 375/384 (97%)

Query: 1   VEITDEMVSDIFKRLGLSFDYQPGLFSVTPPSYRFDIEIEEDLIEEVARVYGFENIPALP 60
           VEITDEMVSDIFKRLGLSFDYQPGLFSVTPPSYRFDIEIEEDLIEEVARVYGFENIPALP
Sbjct: 425 VEITDEMVSDIFKRLGLSFDYQPGLFSVTPPSYRFDIEIEEDLIEEVARVYGFENIPALP 484

Query: 61  PVAANAMRIAPENTRSLFAIRRLLADQDYQEVVNFSFVESAWEADFAGNTDPIKLLNPIA 120
           PVAA+AMRIAPENTRSLFAIRRLLADQDYQEVVNFSFVESAWEADFAGNTDPIKLLNPIA
Sbjct: 485 PVAAHAMRIAPENTRSLFAIRRLLADQDYQEVVNFSFVESAWEADFAGNTDPIKLLNPIA 544

Query: 121 SQMSVMRSSLIAGLVANARYNVNRKAARIRVFEAGAVFHKNAAITDGPLAVAGFEQPKRV 180
           SQMSVMRSSLIAGLVANARYNVNRKAARIRVFE GAVF KNAA+ DGPLAVAGF+QPKRV
Sbjct: 545 SQMSVMRSSLIAGLVANARYNVNRKAARIRVFEVGAVFSKNAAVADGPLAVAGFDQPKRV 604

Query: 181 AALAYGPVAEEQWGQPTRNVDYFDVKADLEALFAPRALRFVKAEHPALHPGRTAHVLLGD 240
           AALAYGPVAEEQWGQ +RNVDYFDVKADLEALFAPR LRFVK+EHPALHPGRTA VLLG+
Sbjct: 605 AALAYGPVAEEQWGQASRNVDYFDVKADLEALFAPRTLRFVKSEHPALHPGRTAQVLLGE 664

Query: 241 KVVGVIGELHPKWQQKYDLPLAPVVFEVDAEALQERDLPSYSEISKFPAVSRDIALVVKH 300
           +V+GVIGELHPKWQQKYDLPLAPVVFEVDA+ALQ+RDLP+Y+EISKFPAVSRDIALVVK 
Sbjct: 665 QVIGVIGELHPKWQQKYDLPLAPVVFEVDADALQQRDLPTYAEISKFPAVSRDIALVVKQ 724

Query: 301 SVGAQQLLDVFAAEKQANPDCSILQALVLFDEYQGKGLEADEKSLAFRCTLQDTQNTLQD 360
           SVGAQQL+DVFAAEKQANP C ILQALVLFDEYQG+GLE+DEKSLAFRCTLQDTQNTLQD
Sbjct: 725 SVGAQQLMDVFAAEKQANPACQILQALVLFDEYQGRGLESDEKSLAFRCTLQDTQNTLQD 784

Query: 361 DKVDLAVNALVAAASAKLGARLRA 384
           DKVDLA+NALVAAASAKLGARLRA
Sbjct: 785 DKVDLAMNALVAAASAKLGARLRA 808


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,110,384
Number of extensions: 45609
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)