BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0032.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311303|ref|YP_003775395.1| hypothetical protein Hsero_1986...   160   5e-41

>gi|300311303|ref|YP_003775395.1| hypothetical protein Hsero_1986
           [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  160 bits (406), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 130/199 (65%), Gaps = 1/199 (0%)

Query: 3   WHTITFLGDSAITVPGACILALWLAVNRLWRPMLAWLISFGGAMLIVVISKLLFMGWDIR 62
           WH ++F GDSA+TVPGA +LALWLA N  WR ML WL +FGGAM+IVV+SKLLFMGW I 
Sbjct: 10  WHALSFFGDSALTVPGALVLALWLAANGRWRTMLRWLCAFGGAMMIVVVSKLLFMGWHIV 69

Query: 63  PPLL-NFTGFSGHTASSCALYLSVALLLTRRSTPAWRTTILTITALLVTAVGLSRLMIKV 121
           PP L NFTG SGH+AS+   YL + LLL+   +   R   ++   LL   VGLSRL IKV
Sbjct: 70  PPWLPNFTGVSGHSASAMCFYLGLGLLLSEGKSGTARAVTVSGAVLLAVTVGLSRLAIKV 129

Query: 122 HSESEVLLGLLVGASAAWTFGLSLREPAPALRHFLLPFALAAGLLMTGFDKPAPTQSFLQ 181
           HS SEV+ GL +GA A   F L LR PA  LR   +  A AA +L     +PAPTQ  LQ
Sbjct: 130 HSPSEVITGLALGALAGAWFWLGLRGPAEVLRRRFVLVAFAAFMLAGSDARPAPTQQLLQ 189

Query: 182 ELAKNLSGRTEVYVRHAPL 200
           ++A  LSG   VY R  PL
Sbjct: 190 QIALWLSGHERVYTRSEPL 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 521,795
Number of extensions: 16349
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)