BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0031.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein [Herba...   482   e-137

>gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  482 bits (1241), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/396 (58%), Positives = 288/396 (72%), Gaps = 1/396 (0%)

Query: 1   MCALLVSVTCPLAYAADPGQVVVPYVQYSYLHDDNVLRLSGPDAAVSALGAPKLSDSVQS 60
           + A+L  +    A A D GQVV PYVQYS L+DDN+LRL  P  A + LG  ++SD+VQS
Sbjct: 17  VLAVLAFMAAQQARADDDGQVVTPYVQYSILYDDNLLRLRDPAQAQATLGTTQMSDTVQS 76

Query: 61  RTAGLKLDRELSRQHVTLDASATKNTYDYFSQFDNDARDLKTNWSWFLGERFSGDIGYVY 120
           +  G++ DR  SRQH+ LDA  T+NT+D F QFDND RDL   W W LGE  SGDIGYVY
Sbjct: 77  KAGGVRFDRMFSRQHIRLDARLTQNTFDNFRQFDNDQRDLNAYWGWVLGEHLSGDIGYVY 136

Query: 121 SKSLTPFQNFRILGLNIRTMQTKYATLAWQLHPDWTVRSQVSHFGLGYDLNTQQANNFSQ 180
           S+ LTPFQN R+L  NIRT QT+YAT AWQLHPDWTVR Q S F LGYDL + Q N+FSQ
Sbjct: 137 SQGLTPFQNLRVLEKNIRTAQTRYATAAWQLHPDWTVRGQYSRFSLGYDLPSLQNNSFSQ 196

Query: 181 NLAELGLDYNPRSGSVVGVQVRKTDGRYPNDVLVGTESINNSFTQEDYKLKVVWLYSAKT 240
           ++ E+GLDY  RSGS+ G+QVR T G YP   LV    INNSF+Q++ K +V WLYS KT
Sbjct: 197 DIYEMGLDYTARSGSIAGLQVRHTRGNYPEPALVSGALINNSFSQDELKARVSWLYSDKT 256

Query: 241 KLQFLGGLTQRDRKSPTGGGGYRGFNARLVGDWAATGKTGFVANLWREIGGVNDVDANFA 300
           KLQFLGG  +R+R +  G   + G NARL+ DW AT KT F  NL+REIGGV+D+DAN+A
Sbjct: 257 KLQFLGGYVRRERDTG-GAANFSGLNARLIADWDATAKTAFTMNLYREIGGVSDIDANYA 315

Query: 301 LTTGASLGATYLPTAKLRVEGLVDVERRNYNGASIVTGVTPSSRRDSYEKASLSLTYAPT 360
           LT G SL   +  T K+RV+  +D +RR+YNGA++VTGVTPS R+D+Y+K S  + YAP 
Sbjct: 316 LTNGLSLSTRWRATEKIRVDAGIDYQRRDYNGAAVVTGVTPSGRKDTYKKYSFGVIYAPL 375

Query: 361 TSLSILLAVYRESLQSNISNFGYVSNGVSLTSRYEF 396
            SLS++ A+YRE   SNIS FGYVSNG++LT+RYEF
Sbjct: 376 RSLSLMAAIYREDSSSNISGFGYVSNGIALTTRYEF 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,244,333
Number of extensions: 52387
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)