BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0028.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311306|ref|YP_003775398.1| peptidyl/prolyl cis-trans isome...   226   1e-60

>gi|300311306|ref|YP_003775398.1| peptidyl/prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  226 bits (576), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/234 (54%), Positives = 160/234 (68%), Gaps = 9/234 (3%)

Query: 19  GLVARQLMINAARKDKLDNDPAVVADMERARNLVLAQSYVAGKLKAPVRPSDQEIEDFYR 78
           GLVARQ+++NAARK+KLD DPAV+ADMERAR+LVLAQSYV  KL  P RPS QE+  FY 
Sbjct: 74  GLVARQVLVNAARKEKLDADPAVLADMERARDLVLAQSYVQRKLAKPTRPSQQEVSTFYD 133

Query: 79  KNPDWFAQRKQYEFAQLIIAGTSLTPELNALMDQPGKR-LDDVVGWLDSHRVQYARQQVV 137
           ++PDWFAQR+QYEFA+L+I   S+  EL  +M   G R L++V  WL    + + R QV 
Sbjct: 134 QHPDWFAQRQQYEFAELVIDRASVNEELTKMM--VGVRPLEEVAAWLQKQHIPFTRLQVT 191

Query: 138 KTSADLPQQMNTSLKTMERGTMFVVIEGPTAILTSLQDVKNVPMTLAVASPQIAQYLVTL 197
           KTS DLP  M   +K ME+G +F+V EG  AIL +L DV+NVP++ A A+ QI QYL   
Sbjct: 192 KTSMDLPPPMLAGVKKMEKGQLFIVNEGDAAILAALADVRNVPLSRAAATQQIEQYLANQ 251

Query: 198 QQNQASEQLVERLKKDAKIELTEQAKSFKDLSAAAPADKDGAAAQGSPGKDAAS 251
           +Q + +EQ V RLK DAKI   + AK+ KD S A  AD        SPGKDAA+
Sbjct: 252 RQGEITEQAVARLKADAKIVYFDSAKTLKDNSVAPVADAT------SPGKDAAA 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 671,702
Number of extensions: 24037
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)