BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0027.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide expo...   389   e-109

>gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide export
           protein [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/264 (73%), Positives = 228/264 (86%), Gaps = 3/264 (1%)

Query: 2   MRKIVFLLIGLMLS--SVSLLAQADDILLGPGDVIRVKVYGSDDLSLETRISEAGVISFP 59
           MRKI+ +L GL+++  + S  A+A+DI LGPGDVIR+ VYGS DL+LETRISEAGVIS+P
Sbjct: 1   MRKILLMLAGLLVAVLAFSGSARAEDIPLGPGDVIRINVYGSQDLTLETRISEAGVISYP 60

Query: 60  LVGEVKIGGLSTAQAETKIAGLLKKGGYLVNPQVNILVTVPQSQMVSVLGQVSKPGRYPL 119
           L+GEVKIGG+STAQAE KIAG+LK+GGYLVNPQVNILVT P SQM+SVLGQV KPGRYPL
Sbjct: 61  LIGEVKIGGMSTAQAERKIAGMLKQGGYLVNPQVNILVTAPASQMISVLGQVYKPGRYPL 120

Query: 120 DGKRNVADVIALAGGVTPDGGDAVTIVRKNGGAVSKQLVDIYSITHSGDTSELPEVQAND 179
           DG+RNVADVIALAGGV PDGGD +TIVR   G V++  VDIY+ITH+GDT+ELP V AND
Sbjct: 121 DGRRNVADVIALAGGVNPDGGDTITIVRTEDGKVTRTAVDIYAITHNGDTTELPTVGAND 180

Query: 180 VIYVERSLRFYIYGEVQRPGMYKLERGTTLLQALSVGGGLTQRGTERGLVVKRQ-VDGKL 238
           V+YVER  RFYIYGEVQRPG YKLERGTT+LQAL++GGGLT RGTERGL VKR+  +G+L
Sbjct: 181 VVYVERYQRFYIYGEVQRPGAYKLERGTTVLQALTLGGGLTPRGTERGLKVKRRDANGEL 240

Query: 239 EELHLNKDDPLQADDVVYVKESWF 262
           +E+ + KDD L  DD+VYVKESWF
Sbjct: 241 QEISVKKDDLLLPDDIVYVKESWF 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.138    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 838,625
Number of extensions: 35926
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)