BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0026.p
         (431 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis ...   379   e-106
gi|300310008|ref|YP_003774100.1| phosphoribosylaminoimidazole-su...   324   1e-89

>gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/277 (72%), Positives = 231/277 (83%), Gaps = 3/277 (1%)

Query: 1   MNLSQFVLILQAHLRVILLILSITVLVALGISLTQSKQYKATSSVVLNYKASDPVTGLVV 60
           MNLSQF+LIL+AHL++IL I  +TV+ AL +SL   K YKATSSVVLNYKA+DPVTG +V
Sbjct: 1   MNLSQFLLILRAHLKIILAIFGVTVVAALVVSLVLPKTYKATSSVVLNYKATDPVTGTMV 60

Query: 61  APQALPGFMPTQVAIINSPSVALAVVDNLKLAQQPAVKAAFDAQNHGDMDIRNWLAGVLL 120
             QALPG+MPTQV IINS S ALAVVD LKLAQ PAVK ++ A ++  +DIRNWLAG+LL
Sbjct: 61  TAQALPGYMPTQVDIINSRSTALAVVDALKLAQDPAVKESY-ANSNSQLDIRNWLAGILL 119

Query: 121 AKLDAVASKESSVIDITFRADDPQFAALVANAFAAAYQQVSMQLKLDPTRKASSYFNDQT 180
             LDA AS++SSVIDIT++  DPQ  A +ANAFA AYQQVSMQLKLDPTRKAS+YFNDQ 
Sbjct: 120 GNLDAQASRDSSVIDITYKGRDPQTVATMANAFAEAYQQVSMQLKLDPTRKASAYFNDQI 179

Query: 181 KLLRDAYEQAQAKLSKYQEEHGITNLDTRTDVENNRLNDLSTQLVMAQSALAEAQSRSRQ 240
           K+LR+ YEQAQAKLSKYQ+EHGITNLD R DVENNRLNDLSTQLV AQ ALAEAQSR RQ
Sbjct: 180 KVLRENYEQAQAKLSKYQQEHGITNLDNRVDVENNRLNDLSTQLVAAQGALAEAQSR-RQ 238

Query: 241 AKAGGAAESPDVNASGLIQTLKSNLAISEARFEQASK 277
           A AG A  SPDVNA+ L+Q LK+NLA SEARF QA+K
Sbjct: 239 A-AGSAQNSPDVNANPLVQNLKANLAASEARFAQAAK 274


>gi|300310008|ref|YP_003774100.1|
           phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  324 bits (830), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/242 (70%), Positives = 186/242 (76%), Gaps = 13/242 (5%)

Query: 193 KLSKYQEEHGITNLDTRTDVENNRLNDLSTQLVMAQS---ALAEAQSRSRQAKAGGAAES 249
           KL      H +T +D  + V    +  +  + V+A+     L EA  R     +G     
Sbjct: 67  KLGHIVPNH-LTGVDPESVVSPAEVEQVRGRAVVAKRLKPILVEAVVRGYIIGSGWK--- 122

Query: 250 PDVNASGLIQTLKSNLAISEARFEQASKLEQPIFTPAAKADLGEHDENISFEETEKRIGT 309
            D  A+G I  ++       A  +QASKLEQPIFTPAAKADLGEHDENISFEETEKRIG 
Sbjct: 123 -DYQATGAICGIRL-----PAGLQQASKLEQPIFTPAAKADLGEHDENISFEETEKRIGA 176

Query: 310 ELAHKIRDVAIQLYKEAADYAATRGIIIADTKFEFGLDDNGVLHLMDEVLTADSSRFWPA 369
           ELAHKIRDVAIQLYKEAADYAATRGIIIADTKFEFGLDDNGVLHLMDEVLTADSSRFWPA
Sbjct: 177 ELAHKIRDVAIQLYKEAADYAATRGIIIADTKFEFGLDDNGVLHLMDEVLTADSSRFWPA 236

Query: 370 DSYQVGISPPSFDKQFVRDYLETVEGWQKTPPAPALPAEVIEKTGAKYREALERLTGEKL 429
           DSYQVGISPPSFDKQFVRDYLETV+GW+KTPPAP LPA+VIEKTGAKYREALERLTG KL
Sbjct: 237 DSYQVGISPPSFDKQFVRDYLETVQGWRKTPPAPPLPADVIEKTGAKYREALERLTGNKL 296

Query: 430 KD 431
           KD
Sbjct: 297 KD 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,122,475
Number of extensions: 42002
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 431
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,203,190
Effective search space: 412694170
Effective search space used: 412694170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)