BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0017.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310013|ref|YP_003774105.1| flavin reductase domain, FMN-bi...   330   3e-92
gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate 3-monoox...    62   2e-11
gi|300310670|ref|YP_003774762.1| 4-hydroxyphenylacetate 3-monoox...    58   3e-10

>gi|300310013|ref|YP_003774105.1| flavin reductase domain,
           FMN-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  330 bits (847), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 156/166 (93%), Positives = 163/166 (98%)

Query: 1   MHTRFPRAEARQFDAAHFRQALSQFATGVTVITTRLADGSLLGLTASSFNSVSLDPPLVL 60
           MHTRFPRA+ARQFDAAHFRQALSQFATGVTVITTRLADG+LLGLTASSFNSVSLDPPLVL
Sbjct: 1   MHTRFPRADARQFDAAHFRQALSQFATGVTVITTRLADGTLLGLTASSFNSVSLDPPLVL 60

Query: 61  WSLGTRANSLPVFSGNSHYVINILSAEQAHLAQQFASKMENRFEGVAYTLSRTGQPILDG 120
           WSLG++ANS+PVFSGNSHYVINILSA+QAHLAQQFASKMENRFEGVAYTLSRTGQPIL+G
Sbjct: 61  WSLGSKANSMPVFSGNSHYVINILSADQAHLAQQFASKMENRFEGVAYTLSRTGQPILEG 120

Query: 121 ASAWFECHNRSQYPEGDHVIFVGEVEHCEVDPQAALVFHNGRFTKT 166
           ASAWFECHNRSQYPEGDHVIFVGEVEHCE DPQAALVFH GRF KT
Sbjct: 121 ASAWFECHNRSQYPEGDHVIFVGEVEHCEADPQAALVFHGGRFIKT 166


>gi|300310811|ref|YP_003774903.1| 4-hydroxyphenylacetate
           3-monooxygenase small subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 166

 Score = 62.0 bits (149), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 7/157 (4%)

Query: 18  FRQALSQFATGVTVITTRLADGSLLGLTASSFNSVSLDPPLVLWSLGTRANSLPVFSGNS 77
           FR A+++ +  V +ITT    G    +T S+ +SVS +P  VL  +   + + P+  GN 
Sbjct: 5   FRDAMARLSAAVNIITTDGPAGRA-AMTVSAVSSVSDEPATVLVCINVSSAAHPILVGNG 63

Query: 78  HYVINILSAEQAHLAQQFAS----KMENRFEGVAYTLSRTGQPILDGASAWFECHNRSQY 133
              INIL+A    +A+  A       E R   V + +   GQP+L  A A  E     Q 
Sbjct: 64  RLCINILAAHHEDVARIIAGMTGLAAEERMAQVRWEMGDYGQPVLPDALAVLEGDIVLQQ 123

Query: 134 PEGDHVIFVGEVEHCEVDPQAA--LVFHNGRFTKTEA 168
             G H +   E+ H  +    A  L +   RF +  A
Sbjct: 124 QTGTHSVLFVEIRHIRLAAAQADGLAYFGRRFHRIAA 160


>gi|300310670|ref|YP_003774762.1| 4-hydroxyphenylacetate
           3-monooxygenase small subunit [Herbaspirillum
           seropedicae SmR1]
          Length = 190

 Score = 58.2 bits (139), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 7/156 (4%)

Query: 18  FRQALSQFATGVTVITTRLADGSLLGLTASSFNSVSLDPPLVLWSLGTRANSLPVFSGNS 77
           FR A++     V++ITT   +G   G+TAS+  SV+  PP +L  +   +    VF  N 
Sbjct: 32  FRHAMAHLPAAVSIITTN-GEGGRCGITASAVCSVTDTPPTILVCINRSSAMHEVFRKNG 90

Query: 78  HYVINILSAEQAHLAQQF--ASK--MENRFE-GVAYTLSRTGQPILDGASAWFECHNRSQ 132
              +N+LS E   LA  F  A+K  ME RF   +        QP+L  A    +   R  
Sbjct: 91  RLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIWEQPGELDQPVLADALVKLQGRIREF 150

Query: 133 YPEGDHVIFVGEVEHCEVDPQA-ALVFHNGRFTKTE 167
              G H +   E+   +V+ +  +L++ N  F K +
Sbjct: 151 KEVGTHSVMFVELAEVKVNEKKDSLIYFNRLFHKVK 186


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 530,342
Number of extensions: 20041
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 3
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)