BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0011.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310019|ref|YP_003774111.1| signal peptide protein [Herbasp...   303   7e-84

>gi|300310019|ref|YP_003774111.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 187

 Score =  303 bits (775), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 162/183 (88%), Positives = 173/183 (94%)

Query: 8   RFLKPTLVALAAAAFTLSAHAAPLKVDAAKSSVTATFKQLNVPVDAKFKKFNAAIDFDAA 67
           RF+KPTL+ALAAA+F LSA AAPLKVDAAKS+V ATFKQLNVPVDAKFKKF A IDFDAA
Sbjct: 5   RFIKPTLLALAAASFALSAQAAPLKVDAAKSNVVATFKQLNVPVDAKFKKFAATIDFDAA 64

Query: 68  KPEQGKASVEIDVASFDLGEAEYNKEVQKKEWFNAAQFPKASFVASSIKAAGAGKYDVAG 127
           KP +GKA+VEIDV SFDLGE +YNKEVQKKEWFNAAQFPKASFV+SSIKA GAGKYDVAG
Sbjct: 65  KPAEGKANVEIDVTSFDLGEPDYNKEVQKKEWFNAAQFPKASFVSSSIKANGAGKYDVAG 124

Query: 128 KLTIKGKSTDVSFPLTVKKDGAAQVFDGTLPIKRLTYNVGEGEWKDTGMVADEVTIKFHI 187
           KLTIKGK+TDVSFPLTVKK+GAAQVFDG LPIKRLTYN+GEGEWKDTGMVADEVTIKFHI
Sbjct: 125 KLTIKGKTTDVSFPLTVKKEGAAQVFDGVLPIKRLTYNIGEGEWKDTGMVADEVTIKFHI 184

Query: 188 VAQ 190
           VAQ
Sbjct: 185 VAQ 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 469,995
Number of extensions: 16802
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)