BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0551.p (1112 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin prote... 572 e-164 gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer... 529 e-151 >gi|300310626|ref|YP_003774718.1| filamentous hemagglutinin protein [Herbaspirillum seropedicae SmR1] Length = 2658 Score = 572 bits (1474), Expect = e-164, Method: Compositional matrix adjust. Identities = 399/886 (45%), Positives = 550/886 (62%), Gaps = 55/886 (6%) Query: 6 GDVNLAAGRNVSLGTVNENFRQQISWANDSGASNWVGTLTGPNLVDQSNGAHGISESGVN 65 G+V L A ++S+G + +N +I ++ G W+ T D S+ A G Sbjct: 1440 GEVTLNAAGDISIGAMQKNNDNRI---DERGGKAWMKTH------DSSSVAAG------- 1483 Query: 66 RATLTGSKDVSTQVSGNNISIRAGQDVVTKGTQIVAEGALSATAGRDVRI-ETANESGSA 124 + + G K V+ +G R+ V G+ I + G ++ A DV + ET + S Sbjct: 1484 -SLIEGEKGVNLIATG-----RSDAKVSVAGSDIYSNGTIAIQAKGDVTVAETRSSSDEW 1537 Query: 125 RDEHQHSSGGLLTATSVKTDDSSSYSRNVGSTFSGNTVAVRAGNDVNITGSDVVSTQGTA 184 + H S G L ++S +TD N GST SGN V + AG ++ + GS+VVST+ T+ Sbjct: 1538 QQAHSESRGFLSRSSSDRTDQVRQDMAN-GSTLSGNKVVIDAGRNIAVRGSEVVSTELTS 1596 Query: 185 LAAGNNVNIVAATDSSTQRNFRQETKSGVMGAGFGVTVGSRVQSHDVDGQSKTAAASTVG 244 L A N+V+I + + Q +++++ KSG+MGAGFG+++GS+ Q + +G S T ASTVG Sbjct: 1597 LRAANDVSITTTQNFTEQSHYKEDRKSGLMGAGFGISIGSQGQMANGNGSSVTNNASTVG 1656 Query: 245 SVEGNVSIVAGNRYTQVGSDVVAPKGDIDIAAKSVEIRAAEQASRTVTEDKYKQSGVTLS 304 SV GNV+I+AGN + Q+GS VVAP+GDI+I AKSV+I AA AS E+K+KQSG+TL+ Sbjct: 1657 SVNGNVNIIAGNAFRQIGSQVVAPQGDINILAKSVDIGAAYDASVYTQENKFKQSGLTLA 1716 Query: 305 VTSPVISAMQSVDQMSDAASKTKSGRAKALAAATAGMSVYSAVGDMQKASAEGSGNIGIS 364 + SPVIS +Q+ Q+ A KT R +ALAAAT + Y A + + SG + I+ Sbjct: 1717 INSPVISVLQTGQQLIQAGQKTPDKRMQALAAATLAKNAYDAGAALIDKPTDTSG-VKIT 1775 Query: 365 VMLGSSQNSSRTEQNTVTQRGSTVASGGNMSIRATGGGTDSNITIAGSDVNAKGNLALKA 424 + LGSSQ+S++ Q + GSTVA+GG ++I A+GG S+I + GS ++A G+++L A Sbjct: 1776 LSLGSSQSSNKVTQASSQAVGSTVAAGGAVNIVASGG-PRSDINVVGSAISAGGDVSLVA 1834 Query: 425 DNDINLIASQNTDEQHGDRSSS--SWGVGFTAQFGSQTKFGFTANAAGSRGNSDGKDVSN 482 D++INL+A+Q+ QHG+ +SS S G+GF A GSQ F A +RGN DG D+ N Sbjct: 1835 DHEINLLAAQSAYSQHGNNNSSGASIGIGF-AMGGSQNGFTLELGANRARGNLDGDDLVN 1893 Query: 483 VMTQVRAGGQVNIDSGRDTNLIGATVSGDKVVADVGRDMNIASVQDTSTFKSRDQSIGGS 542 + + AG Q ++ SG DTN+ G+TVS V A +G D+NI S+QD ST+ S+ S G Sbjct: 1894 KASTISAGNQASLISGGDTNVRGSTVSAKTVAAAIGGDLNIESLQDKSTYGSKQSSAGVG 1953 Query: 543 ATIGY------GSGASVNASRSRVDADYASVGQQAGIMAGDGGFQINVKGNTDLKGAQIA 596 ++ S S + S S+ DY SV QAGI AGDGGF++ V GNTDLKGA I+ Sbjct: 1954 LSLCIPPFCYGASSVSGSLSGSKAKGDYQSVVTQAGIKAGDGGFRLVVAGNTDLKGAVIS 2013 Query: 597 SMDKAVEEGKNSLTTGTLTSSDIQNRSQYSAESQSVS--------------------AGT 636 S KA+E+GKN L TGTLT SDI N Y A SVS A Sbjct: 2014 STAKAIEDGKNFLQTGTLTYSDISNHDAYEASGYSVSGSMSSQLGDQSKAKTEADKAAAN 2073 Query: 637 SGGKPGGGAGIGNASGSETSVTRSGVSGGAVKITDAQAQQAKTGQSPDQVVASLDTSVRT 696 S PGG G + GS++SVTRSG+SGG V ITD Q Q+A TGQS +Q++ASL+ V + Sbjct: 2074 SRTGPGGSPGYSDTGGSQSSVTRSGISGGTVIITDEQGQKAATGQSAEQILASLNRDVDS 2133 Query: 697 GKDSSNSLAKNWDGNQLREDVEAQAKITQAFGQQAAKMVGSYADQKEKELRLAASKAAQD 756 KDSS +L+K WDG LR+ VEA+A+I QAFGQ AK +G YAD KE++L+ AA +A QD Sbjct: 2134 SKDSSGALSKAWDGEALRQQVEAEAQIRQAFGQTVAKSIGDYADTKERDLKNAAKQAEQD 2193 Query: 757 GDQAQSDALSAEAEKWKEGGAYRAGAHAAVGLLAGGVSGAMGAAASSILMPDVAEQIKKL 816 GD Q+ L AEA +W E G RA HAA G L+GG++GA AAA S LMP +AEQIKK+ Sbjct: 2194 GDAEQAAKLRAEAARWGEDGTARAAVHAAAGALSGGLAGAASAAAVSKLMPSLAEQIKKM 2253 Query: 817 GLPPEVESAVSLAAAAGIGAAVGGGAGAASAYNVDLNNRQLHEDAK 862 GLP E+E V+ AAA+G+GA +GG AGAA+A VDLNNRQLH+ + Sbjct: 2254 GLPSELEGVVAAAAASGLGAIIGGSAGAATAVTVDLNNRQLHQSER 2299 Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 120/477 (25%), Positives = 211/477 (44%), Gaps = 98/477 (20%) Query: 101 AEGALSATAGRDVRI--ETANESGSARDEHQ--------HSSGGLLTATSVKTDDSSSYS 150 A GAL GRDV + +T N SG R E + +++GG L K D ++ + Sbjct: 1189 ASGAL--IGGRDVTLAADTVNNSGIVRAEDKLAVAARDINNTGGELRGD--KVDVLATET 1244 Query: 151 RNVGSTF---------SGNTVAVRAGNDVNITGSDVVSTQGTALAAGNNVNIVAATDSST 201 N+G+ F +G V++ A ND+NI G+ + + LAA NN+ I AAT Sbjct: 1245 LNIGTDFQNYGRQGSVTGRQVSL-AANDINIIGAKIKADDTLKLAAQNNLTIAAAT---- 1299 Query: 202 QRNFRQETKSGVMGAGFGVTVGSRVQSHDVDGQSKTAAASTVGSVEGNVSIVAGNRYTQV 261 + + K GAG +++ V Q + A ST+ G+ S AG Sbjct: 1300 ---AQHDVKLTWSGAGEREENHGMMRNGGVTAQLQQALGSTI-EAGGDASFAAGRNIAVR 1355 Query: 262 GSDVVAPKGDIDIAAKSVEIRAAEQASRTVT---EDKYKQS--GVTLSVTSPVISAMQSV 316 GS + +A SVE+ A + A+ +V D+Y + G T ++T+ I+A + + Sbjct: 1356 GSSIDVKGNAALLAGGSVEVSAVKTATDSVVTGRSDRYDLNVVGHTENLTTSQIAAGKGL 1415 Query: 317 DQMSDAASKTKSGRAKALAAATAGMSVYSAVGDMQKASAEGSGNIGISVMLGSSQNS--- 373 S SG+ + A + S G++ + +G+I I M ++ N Sbjct: 1416 -------SIVASGQNGSGDITLAASRLSSKEGEV---TLNAAGDISIGAMQKNNDNRIDE 1465 Query: 374 ------SRTEQNTVTQRGSTVASGGNMSIRATGGGTDSNITIAGSDVNAKGNLALKADND 427 +T ++ GS + +++ AT G +D+ +++AGSD+ + G +A++A D Sbjct: 1466 RGGKAWMKTHDSSSVAAGSLIEGEKGVNLIAT-GRSDAKVSVAGSDIYSNGTIAIQAKGD 1524 Query: 428 INLIASQNTDEQHGDRSSSSWGVGFTAQFGSQTKFGFTANAAGSRGNSDGKDVSNVMTQV 487 + + +++ SS W Q S+++ GF + ++ R + +D++N Sbjct: 1525 VTVAETRS--------SSDEW-----QQAHSESR-GFLSRSSSDRTDQVRQDMAN----- 1565 Query: 488 RAGGQVNIDSGRDTNLIGATVSGDKVVADVGRDM-----NIASVQDTSTFKSRDQSI 539 G+T+SG+KVV D GR++ + S + TS + D SI Sbjct: 1566 -----------------GSTLSGNKVVIDAGRNIAVRGSEVVSTELTSLRAANDVSI 1605 >gi|300312548|ref|YP_003776640.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 2685 Score = 529 bits (1363), Expect = e-151, Method: Compositional matrix adjust. Identities = 377/896 (42%), Positives = 530/896 (59%), Gaps = 111/896 (12%) Query: 3 AATGDVNLAAGRNVSLGTV------NENFRQQISWA----------NDSGASNWVG---- 42 AATG ++++AGR+++LGTV + NF A N G V Sbjct: 1299 AATGKLSMSAGRDINLGTVKTGSTYDANFSGYFGHAQSVSSVGSTVNAGGDLTMVAQRDL 1358 Query: 43 TLTGPNLVDQSNG----------------AHGISESGVNRA---TLTGSKDVSTQVSGNN 83 +LT + +NG A +ES + RA + + + D S V G+N Sbjct: 1359 SLTAAQVAIGTNGSGNGSLMAGRAVTIGAALDRAESTIGRAASRSYSRADDESVAVRGSN 1418 Query: 84 ------ISIRAG----QDVVTKGTQIVAEGALSATAGRDVRIETANESGSARDEHQHS-S 132 ISI+AG DV + I A AL A D+ + + ES + E+ S S Sbjct: 1419 IDAAGGISIKAGLMEKADVKVAASSITAGKALEVAATGDINV-VSEESFQSHSEYAKSTS 1477 Query: 133 GGLLTATSVKTDDSSSYSRNVGSTFSGNTVAVRAGNDVNITGSDVVSTQGTALAAGNNVN 192 GLL++T+ + +Y+ VGST SG+T ++AG D++I GS+VVS+ GT+L A NN+ Sbjct: 1478 RGLLSSTTRTSYGKRAYTNAVGSTLSGDTTVLQAGKDMSIVGSNVVSSAGTSLVAANNIT 1537 Query: 193 IVAATD---SSTQRNFRQETKSGVMGAGFGVTVGSRVQSHDVDGQSKTAAASTVGSVEGN 249 + +A+D S+ N + G GF T+G+R + + TA +S VGS++GN Sbjct: 1538 VASASDKVESAEGSNKKSSGLLSGGGLGF--TIGTRELDNKNTTVNSTAVSSNVGSIDGN 1595 Query: 250 VSIVAGNRYTQVGSDVVAPKGDIDIAAKSVEIRAAEQASRTVTEDKYKQSGVTLSVTSPV 309 VSI AGN YTQ GS+V+APKGDID+ AK + I AA + R+ + +KQSG+T+ +TSPV Sbjct: 1596 VSIKAGNAYTQSGSNVLAPKGDIDVVAKQISILAAAETERSTQDMVFKQSGLTIQITSPV 1655 Query: 310 ISAMQSVDQMSDAASKTKSGRAKALAAATAGMSVYSAV---------------------- 347 +SA+Q+ QM+ AA T GR + LAAA G + +AV Sbjct: 1656 LSAIQTAQQMAQAAKSTSGGRMQLLAAANIGFAGKNAVDAVRTGQGFAVDGKDNPQVRTN 1715 Query: 348 -----GDMQ-----------KASAEGSGNIGISVMLGSSQNSSRTEQNTVTQRGSTVASG 391 GD++ +A+ +G I +++ +G+S++ + ++ + T RGST+ +G Sbjct: 1716 ALDENGDLKLGADKKPETRDATAADKAGGINLAISVGASKSENHSQSSASTARGSTLNAG 1775 Query: 392 GNMSIRATGGGTDSNITIAGSDVNAKGNLALKADNDINLIASQNTDEQHGDRSSSSWGVG 451 GN+S+ A GGG DSN+ + GSD+ + N LKADN++ L+A+Q+T EQ + S VG Sbjct: 1776 GNISLTAQGGGADSNVIVQGSDIRSGANTLLKADNEVRLLAAQSTTEQSSSNKAMSGSVG 1835 Query: 452 FTAQFGSQTKFGFTANA--AGSRGNSDGKDVSNVMTQVRAGGQVNIDSGRDTNLIGATVS 509 + G+ GF NA +GSRG DG DV+ V T V AG ++ I SG DT + GA S Sbjct: 1836 IS--IGTD---GFLVNAGLSGSRGRGDGSDVAQVNTHVDAGNKLTIASGTDTTIKGAVAS 1890 Query: 510 GDKVVADVGR----DMNIASVQDTSTFKSRDQSIGGSATIGYGS-GASVNASRSRVDADY 564 G +VV DVG ++NI S+QDTST+KSR QS G S + G G S+N +RS VD +Y Sbjct: 1891 GKQVVIDVGTSGSGNLNIESLQDTSTYKSRQQSAGVSISAGMGRMSGSLNLARSSVDGNY 1950 Query: 565 ASVGQQAGIMAGDGGFQINVKGNTDLKGAQIASMDKAVEEGKNSLTTGTLTSSDIQNRSQ 624 ASV +Q+GI AGD GFQINV GNTDLKGA+IAS DKA +GKNSLTT TLT SDI+NRS Sbjct: 1951 ASVNEQSGIKAGDDGFQINVAGNTDLKGAKIASTDKAAADGKNSLTTETLTQSDIKNRSD 2010 Query: 625 YSAESQSVSAGTS-----GGKPGGGAGIGNASGSETSVTRSGVSGGAVKITDAQAQQAKT 679 + AESQSV GT+ G G G GN SGS++S TRSG+S +KITD AQQAKT Sbjct: 2011 FKAESQSVGMGTNLAGSVLGLAGSALGRGNVSGSDSSTTRSGISQADIKITDDAAQQAKT 2070 Query: 680 GQSPDQVVASLDTSVRTGKDSSNSLAKNWDGNQLREDVEAQAKITQAFGQQAAKMVGSYA 739 G++ +Q +AS++ V + +D+S +AK W+G +L+ DVEAQA+IT+AFGQQ A++ G+YA Sbjct: 2071 GKTAEQTIASINADVSSERDTSGKIAKTWNGQELQADVEAQAEITRAFGQQVAQLAGAYA 2130 Query: 740 DQKEKELRLAASKAAQDGDQAQSDALSAEAEKWKEGGAYRAGAHAAVGLLAGGVSG 795 + KEKELR AAS AAQ+GDQ Q+ L AEA++WK+GG + A L+ GG+ G Sbjct: 2131 ESKEKELRQAASNAAQNGDQTQALLLGAEADQWKDGGENKRALKAITTLVIGGLGG 2186 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.123 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,975,916 Number of extensions: 120351 Number of successful extensions: 518 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 464 Number of HSP's successfully gapped: 7 Length of query: 1112 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 1017 Effective length of database: 1,170,045 Effective search space: 1189935765 Effective search space used: 1189935765 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 136 (57.0 bits)