BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0546.p (245 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 297 6e-82 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 235 3e-63 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 234 4e-63 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 234 7e-63 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 232 2e-62 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 297 bits (760), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 208/259 (80%), Positives = 214/259 (82%), Gaps = 15/259 (5%) Query: 1 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS Sbjct: 427 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 486 Query: 61 ATAAKEIKQLIDDSVQKVEAGSQLVAQAGSTMDEVVSSVRRVTDIVGEISSASQEQSAGI 120 ATAAKEIK LIDDSVQKVE GSQLVAQAGSTM+EVVSSVRRVTDIVGEIS+ASQEQS+GI Sbjct: 487 ATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGI 546 Query: 121 TEVGNAVTLMDEATQQNAALVEEAAAAAKSLQEQAAHLAAVVAGFKLDESGGAAPITPPP 180 TEVGNAV MDEATQQNAALVE+AAAAAKSLQEQAAHLAAVVAGFKLDESG A P PP Sbjct: 547 TEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKLDESGAAHP-MSPP 605 Query: 181 VHHAAPSPAAAARPAPVNITPKPAPLKAKPASKPAL--------------PAEPAAPAAP 226 AA A AR A VN+TPKPA LKAKPA+KP L PAAP Sbjct: 606 PAPAAAPAAPQARSAAVNVTPKPAALKAKPAAKPVLAAQAAAAPAPASAPALAAKPPAAP 665 Query: 227 KAAPKAPPKSGGGDDWEEF 245 KA KA PKS GGDDWEEF Sbjct: 666 KAPGKAAPKSSGGDDWEEF 684 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 235 bits (599), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 129/195 (66%), Positives = 157/195 (80%), Gaps = 6/195 (3%) Query: 1 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60 M I SS KI DI+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS Sbjct: 346 MEEIRASSAKITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRS 405 Query: 61 ATAAKEIKQLIDDSVQKVEAGSQLVAQAGSTMDEVVSSVRRVTDIVGEISSASQEQSAGI 120 ++AAKEIK+LI SV +V+AGS+LV QAG TM +V+++V+RVTDI+ EIS+AS EQSAGI Sbjct: 406 SSAAKEIKELIMHSVDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGI 465 Query: 121 TEVGNAVTLMDEATQQNAALVEEAAAAAKSLQEQAAHLAAVVAGFKLDESGGAAPITPPP 180 +V +AVT MDEATQQNAALVE+A+AAAKSL++QA L VA F+++ GA P PP Sbjct: 466 DQVSHAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVN---GAGPTVKPP 522 Query: 181 VHHAAPSPAAAARPA 195 AA + A +PA Sbjct: 523 ---AAAASRATVKPA 534 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 234 bits (598), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 138/182 (75%), Positives = 152/182 (83%), Gaps = 2/182 (1%) Query: 1 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60 M IN+SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS Sbjct: 350 MDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS 409 Query: 61 ATAAKEIKQLIDDSVQKVEAGSQLVAQAGSTMDEVVSSVRRVTDIVGEISSASQEQSAGI 120 A AAKEIK LI DSV KVE GS LVAQAG+TM++VVSSVR VTDIV EIS+AS EQS+GI Sbjct: 410 AAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGI 469 Query: 121 TEVGNAVTLMDEATQQNAALVEEAAAAAKSLQEQAAHLAAVVAGFKLDESGGAAPITPPP 180 E+ AVT MDE TQQNAALVE+AAAAAKS+QEQA L ++ FKL++ GAA I P Sbjct: 470 EEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ--GAASIPAAP 527 Query: 181 VH 182 V Sbjct: 528 VR 529 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 234 bits (596), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 153/226 (67%), Positives = 167/226 (73%), Gaps = 28/226 (12%) Query: 1 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60 M I +SSRKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS Sbjct: 348 MEGITDSSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407 Query: 61 ATAAKEIKQLIDDSVQKVEAGSQLVAQAGSTMDEVVSSVRRVTDIVGEISSASQEQSAGI 120 A+AAKEIK LIDDSV KV+ GS+LV QAG+TM EVV+SVRRVTDIVGEISSASQEQSAGI Sbjct: 408 ASAAKEIKTLIDDSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGI 467 Query: 121 TEVGNAVTLMDEATQQNAALVEEAAAAAKSLQEQAAHLAAVVAGFKLDESGGAAPITPPP 180 EVG A+T MDE TQQNAALVE+AAAAA+SLQ+QAA LA +V F +D G A I P Sbjct: 468 AEVGRAITQMDEGTQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVD--GSQASIAP-- 523 Query: 181 VHHAAPSPAAAARPAPVNITPKPAPLKAKPASKPALPAEPAAPAAP 226 AP AKPA++P P P PA P Sbjct: 524 ----------------------TAPQAAKPATRPVQPTTP--PATP 545 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 232 bits (591), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 145/194 (74%), Positives = 161/194 (82%), Gaps = 4/194 (2%) Query: 1 MSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 60 M +IN+SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS Sbjct: 349 MQAINDSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 408 Query: 61 ATAAKEIKQLIDDSVQKVEAGSQLVAQAGSTMDEVVSSVRRVTDIVGEISSASQEQSAGI 120 A AAKEIK LIDDSV+KVEAGSQLV QAG+TM EVV+SV+RVTDIVGEI+ AS+EQS GI Sbjct: 409 AAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGI 468 Query: 121 TEVGNAVTLMDEATQQNAALVEEAAAAAKSLQEQAAHLAAVVAGFKLDESGGAAPITPPP 180 +V A+T MDE TQQNAALVEEAAAAA+SLQ QA +L V+ FK+ E+ AP P Sbjct: 469 EQVNRAITQMDEVTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKI-EAHQVAPAGKPA 527 Query: 181 VHHAAPSPAAAARP 194 + P A AARP Sbjct: 528 ---SKPRAAPAARP 538 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.122 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 360,123 Number of extensions: 7490 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 72 Length of query: 245 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 162 Effective length of database: 1,226,865 Effective search space: 198752130 Effective search space used: 198752130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 129 (54.3 bits)