BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0536.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312466|ref|YP_003776558.1| antimicrobial peptide ABC trans... 334 4e-93 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 122 3e-29 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 121 6e-29 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 117 6e-28 gi|300311701|ref|YP_003775793.1| export system ATP-binding subun... 115 4e-27 >gi|300312466|ref|YP_003776558.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 334 bits (856), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 182/225 (80%), Positives = 204/225 (90%) Query: 1 MHDLRFTWPGQTHPALALPHFQVAAGEHVFVSGPSGSGKSTLLAAIGGIIVPQAGTVEVL 60 + DL+FTW GQ HPALAL ++AAGEHVF+SGPSGSGKSTLLAAIGGII+PQ G+VEVL Sbjct: 15 LRDLQFTWAGQPHPALALTSLRIAAGEHVFISGPSGSGKSTLLAAIGGIILPQHGSVEVL 74 Query: 61 GQPLHRLSAARRDRFRVDHIGFIFQQFNLLPYLSILDNVLLPCQFSSYRRERAGQQGADL 120 G+ LH L A +RDRFRVDH+GFIFQQFNLLPYLSILDNVLLPCQFS+YR++RA QQGA+L Sbjct: 75 GKRLHTLPAPQRDRFRVDHLGFIFQQFNLLPYLSILDNVLLPCQFSAYRKQRALQQGANL 134 Query: 121 KSVAQSLLAALDLAPGLWMRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQ 180 + AQ+LLAALDLAP LW RPVTQLSIGQQQRVAAAR+LIGRPEIIVADEPTSALDSDRQ Sbjct: 135 TAAAQALLAALDLAPSLWQRPVTQLSIGQQQRVAAARALIGRPEIIVADEPTSALDSDRQ 194 Query: 181 QAFLNLLQRECAQSGAALVFVSHDQRLAERFNRRIALEQLNQAAR 225 QAFL LL+RECAQSGAALVFVSHD RLA+ F+R +ALEQ+N AAR Sbjct: 195 QAFLELLRRECAQSGAALVFVSHDLRLAQGFDRLVALEQVNDAAR 239 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 122 bits (305), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 107/197 (54%), Gaps = 10/197 (5%) Query: 21 FQVAAGEHVFVSGPSGSGKSTLLAAIGGIIVPQAGTVEVLGQPLHRLSAARRDRFRVDHI 80 F VAAG + + G SGSGKSTLL + G+ P G+V + G+ ++ L R R + Sbjct: 42 FTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKL 101 Query: 81 GFIFQQFNLLPYLSILDNVLLPCQFSSYRRERAGQQGADLKSVAQSLLAALDLAPGLWMR 140 GF+FQ F LL +L+ L+NV+LP + R R A +L + L L Sbjct: 102 GFVFQSFQLLGHLNALENVMLPLELRGDARAR---------EKATEMLGRVGLGSRLKHS 152 Query: 141 PVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLNLLQRECAQSGAALVF 200 P LS G+QQRVA AR+ + P +++ADEPT +LD+ +A + L+ + G+ LV Sbjct: 153 P-KYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRERGSTLVL 211 Query: 201 VSHDQRLAERFNRRIAL 217 V+HD +A R R I + Sbjct: 212 VTHDNAMAARCQRTITI 228 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 121 bits (303), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 108/214 (50%), Gaps = 8/214 (3%) Query: 6 FTWPGQTHPALALPHFQVAAGEHVFVSGPSGSGKSTLLAAIGGIIVPQAGTVEVLGQPLH 65 FT + L V GE V + G SGSGKSTLL +GG+ P +GTV +LG+ Sbjct: 21 FTQGKYSVKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDFA 80 Query: 66 RLSAARRDRFRVDHIGFIFQQFNLLPYLSILDNVLLPCQFSSYRRERAGQQGADLKSVAQ 125 L + R R +GF++Q +LLP S LDNV +P +R AD + A+ Sbjct: 81 SLGESERGALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKR-------ADAQEQAR 133 Query: 126 SLLAALDLAPGLWMRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLN 185 +L + LA + P +LS G++QRVA AR+L+ P ++ADEPT LD Sbjct: 134 EMLGKVGLAQRVTHVP-GELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTFE 192 Query: 186 LLQRECAQSGAALVFVSHDQRLAERFNRRIALEQ 219 L+ G A V V+HD LA R R + L + Sbjct: 193 LMIELSRTLGTAFVIVTHDIELAGRCGRVLRLSE 226 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 117 bits (294), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 114/203 (56%), Gaps = 17/203 (8%) Query: 20 HFQVAAGEHVFVSGPSGSGKSTLLAAIGGIIVPQAGTVEVLGQPLHRLSAARRDRFRVDH 79 + + AGE V + G SGSGKSTL+ +G + P AG+ V G+ +L A + R +H Sbjct: 29 NLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSYLVAGRETGKLDADELAQLRREH 88 Query: 80 IGFIFQQFNLLPYLSILDNVLLPCQFSSY----RRERAGQQGADLKSVAQSLLAALDLAP 135 GFIFQ+++LL L NV +P ++ RR+RAG+ LLA L LA Sbjct: 89 FGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQRAGE-----------LLARLGLAE 137 Query: 136 GLWMRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLNLLQRECAQSG 195 +P QLS GQQQRV+ AR+L+ ++I+ADEPT ALDS Q + +L +E G Sbjct: 138 RSHHKP-GQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVIKIL-KELHAEG 195 Query: 196 AALVFVSHDQRLAERFNRRIALE 218 ++ V+HD ++A R I ++ Sbjct: 196 HTIIIVTHDMQVASHAQRIIEIK 218 >gi|300311701|ref|YP_003775793.1| export system ATP-binding subunit [Herbaspirillum seropedicae SmR1] Length = 240 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 10/201 (4%) Query: 15 ALALPH--FQVAAGEHVFVSGPSGSGKSTLLAAIGGIIVPQAGTVEVLGQPLHRLSAARR 72 LA+ H A GE +F+ GPSGSGK+T L+ I GI+ P G V V G L L + Sbjct: 31 VLAIDHACLSAAFGEILFIVGPSGSGKTTFLSIISGILRPDGGVVRVNGVDLWNLPEDQL 90 Query: 73 DRFRVDHIGFIFQQFNLLPYLSILDNVLLPCQFSSYRRERAGQQGADLKSVAQSLLAALD 132 FR++ IGF+FQ ++L P L+ +NV +P + + A A++ L D Sbjct: 91 ADFRLNTIGFVFQDYHLFPRLTSAENVAIPLILKNVDWKSA-LASANMFLDVVGLKGCGD 149 Query: 133 LAPGLWMRPVTQLSIGQQQRVAAARSLIGRPEIIVADEPTSALDSDRQQAFLNLLQRECA 192 + P +LS G+QQRVA AR+++ P I++ DEPT++LD D + + L+ + Sbjct: 150 VFP-------LKLSGGEQQRVAIARAIVSSPPILILDEPTASLDGDTGRMIIAFLREKIL 202 Query: 193 QSGAALVFVSHDQRLAERFNR 213 ++ V+HD R++E +R Sbjct: 203 NPRRCILIVTHDPRISEFADR 223 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 728,918 Number of extensions: 30619 Number of successful extensions: 508 Number of sequences better than 1.0e-08: 115 Number of HSP's gapped: 364 Number of HSP's successfully gapped: 126 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)