BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0533.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312473|ref|YP_003776565.1| hypothetical protein Hsero_3175...   377   e-106

>gi|300312473|ref|YP_003776565.1| hypothetical protein Hsero_3175
           [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  377 bits (969), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 184/209 (88%), Positives = 193/209 (92%)

Query: 1   LIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAGAAFYLIR 60
           LIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAGAAFYLI 
Sbjct: 14  LIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAGAAFYLIH 73

Query: 61  EDGGGALSFGSLAEDGQSVTSHQDAFHAWVQCDGYALDFMAPLFQELLVSAGHPLPVPRQ 120
            D  GALSFG+LAEDGQSV S +DAFHAWVQCDGYA+DFMAPLFQELL SAGHPLPVPR+
Sbjct: 74  PDRAGALSFGTLAEDGQSVASDKDAFHAWVQCDGYAIDFMAPLFQELLSSAGHPLPVPRR 133

Query: 121 MFQKDLQRMSADVQALAKPGDFYLASNLELTRELLQQFMAKKALTNLSQLCLEWFRKPPK 180
           MFQKDL RM + VQAL+ PGDFYLA +L LTRELLQQFMAKKALTNLSQLC EWFRKPPK
Sbjct: 134 MFQKDLGRMCSGVQALSVPGDFYLAPDLALTRELLQQFMAKKALTNLSQLCQEWFRKPPK 193

Query: 181 AMPDDLALQGADGEVSRIKLQATAIEGVW 209
           AMPDDLALQGADGE+SRI LQ TAI+GVW
Sbjct: 194 AMPDDLALQGADGEISRISLQPTAIDGVW 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 649,882
Number of extensions: 25122
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)