BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0530.p
         (473 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family [...   894   0.0  

>gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family
           [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/466 (92%), Positives = 445/466 (95%)

Query: 1   MSRAQAIAGVQAYFDDGRFMETLKRRVAIRTESQEAASLPILYDYLRQEITPYLVSLGFD 60
           MSRAQAIAGV+AYFDDGRFMETLKRRVAIRTESQE AS PILYDYL QEITPYL +LGF 
Sbjct: 1   MSRAQAIAGVEAYFDDGRFMETLKRRVAIRTESQEPASRPILYDYLHQEITPYLQALGFT 60

Query: 61  CEVIDNPLPGGSPFLIAERIEEGAAFTLLTYGHGDVVRGYDNQWRAGLSPWEIVVEGERW 120
           CEV+DNPLP GSPFLIAERIE  AAFT+LTYGHGDVVRGYD QWRAGLSPWEIVVEGERW
Sbjct: 61  CEVVDNPLPEGSPFLIAERIEAEAAFTVLTYGHGDVVRGYDKQWRAGLSPWEIVVEGERW 120

Query: 121 YGRGIADNKAQHTINLAALEEVMKVRGGKLGYNVKLILEMGEETGSPGLNEVCRQYAARL 180
           YGRGIADNKAQHTIN AALEEVMKVRGG+LGYNVKLILEMGEETGSPGLN VC+QYA RL
Sbjct: 121 YGRGIADNKAQHTINFAALEEVMKVRGGRLGYNVKLILEMGEETGSPGLNAVCQQYAERL 180

Query: 181 KADLFIASDGPRVNAPTPTMFLGSRGGCNFDLTCHLRDGGHHSGNWGGLLRNPGVRLANA 240
           KADLFIASDGPRVNAPTPTMFLGSRGGCNFDL CHLRDGGHHSGNWGGLLRNPGVRLANA
Sbjct: 181 KADLFIASDGPRVNAPTPTMFLGSRGGCNFDLKCHLRDGGHHSGNWGGLLRNPGVRLANA 240

Query: 241 IACLVDERGAIRVPALLPDALPQSVRKALASVKLGGGPTDPEIDPDWGEPDLTPAERVFG 300
           IACLVDERGAIRVPALLP ALPQSVRKALA VKLGGGPTDPEID DWGEPDLTPAERVF 
Sbjct: 241 IACLVDERGAIRVPALLPSALPQSVRKALAKVKLGGGPTDPEIDTDWGEPDLTPAERVFA 300

Query: 301 WNTLEVLAFKTGNPEAPVNAIPGRATAHCQIRFVVGSDDAHFIEHIRAHLDEHGYDDVQV 360
           WNTLEVLAFKTGNPEAPVNAIPG+A+AHCQIRFVVGSDDAHFIEHIRAHLDEHGYDD+ V
Sbjct: 301 WNTLEVLAFKTGNPEAPVNAIPGQASAHCQIRFVVGSDDAHFIEHIRAHLDEHGYDDIDV 360

Query: 361 TLSGVQFSATRLDPDDEWVRWGLASLQESTGKTPTLLPNLGGSLPNDVFSETLGLPTLWV 420
           +L+GVQF+ATRLDPDDEWVRWGLAS+QE++GK PTLLPNLGGSLPNDVFSETLGLPTLWV
Sbjct: 361 SLAGVQFAATRLDPDDEWVRWGLASMQETSGKEPTLLPNLGGSLPNDVFSETLGLPTLWV 420

Query: 421 PHSYPACSQHAPNEHILASVSRESLQLMAGLFWDLAEQGRDVLARR 466
           PHSYPACSQHAPNEHILASVSRESLQLMAGLFWDLAEQG  VLARR
Sbjct: 421 PHSYPACSQHAPNEHILASVSRESLQLMAGLFWDLAEQGAAVLARR 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,741,471
Number of extensions: 82553
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,198,455
Effective search space: 460206720
Effective search space used: 460206720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)