BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0528.p (315 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 584 e-168 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 260 1e-70 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 235 4e-63 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 235 4e-63 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 207 7e-55 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 584 bits (1505), Expect = e-168, Method: Compositional matrix adjust. Identities = 284/315 (90%), Positives = 297/315 (94%) Query: 1 MLHAVRGIDFQVRKGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNTM 60 MLHAVRGIDFQVR+GEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDG DL+ M Sbjct: 20 MLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGVDLHGM 79 Query: 61 SERQRMQLRGKRMSMIFQEPMTSLNPAYTLGNQLCEAMLQQPGVTRGEARERALYLLHRT 120 ++Q MQLRGKRM+MIFQEPMTSLNP+YTLGNQLCEAMLQQPGV+R EARERALYLLHRT Sbjct: 80 PDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQQPGVSRAEARERALYLLHRT 139 Query: 121 GISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIRE 180 GISNAEDRLRQYPHQLSGGLRQRVMIAMSLMC+PDLIIADEPTTALDVTIQAQILRMIRE Sbjct: 140 GISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIADEPTTALDVTIQAQILRMIRE 199 Query: 181 LQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETSGVAQLFAQPRHPYTRGLLNCIP 240 LQQEFG AVIFITHDLGVVSRIADRVAVMYAGQVVET+ VAQLFAQPRHPYT+GLLNCIP Sbjct: 200 LQQEFGAAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQPRHPYTQGLLNCIP 259 Query: 241 VRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCTLADSGCEQDPPMVQQGSPGLPHEAR 300 VRGKTLPGS LQAIPGVVPSLVGQVSGCAFRNRC ADSGCE+DP MVQQGS PH+AR Sbjct: 260 VRGKTLPGSHLQAIPGVVPSLVGQVSGCAFRNRCAKADSGCERDPQMVQQGSVTAPHQAR 319 Query: 301 CFKLDAPVSAMEVAA 315 C KLD + AMEVAA Sbjct: 320 CLKLDVAMDAMEVAA 334 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 260 bits (664), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 138/302 (45%), Positives = 195/302 (64%), Gaps = 5/302 (1%) Query: 1 MLHAVRGIDFQVRKGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNTM 60 +L AV + V +G +L LVGESG GKS+T +++G++ + ILF G DL M Sbjct: 21 VLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVDAPGRIVGGEILFQGRDLVRM 80 Query: 61 SERQRMQLRGKRMSMIFQEPMTSLNPAYTLGNQLCEAMLQQPGVTRGEARERALYLLHRT 120 + +L+G R++MIFQ+PM +LNP + Q+ +A+L V+R +ARE A L Sbjct: 81 DKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLAHSKVSRQQARELARDTLGMM 140 Query: 121 GISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIRE 180 GI++ E+RL+ YPHQLSGG+RQRV IA++++ PDLIIADEPTTALDVTIQAQIL +++ Sbjct: 141 GIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIADEPTTALDVTIQAQILSEVQK 200 Query: 181 LQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETSGVAQLFAQPRHPYTRGLLNCIP 240 L ++ GTA+I+ITHDL VV+ +AD VAVMYAG++VE V + P HPYT+GL+ +P Sbjct: 201 LARQHGTALIWITHDLSVVAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLP 260 Query: 241 VRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCTLADSGCEQDPPMVQQGSPGLPHEAR 300 + G+RL+ IPG+ P+L+ CAF RC C P + + P H R Sbjct: 261 SNNRR--GARLRQIPGMTPNLLHLPPTCAFAARCERLSQQCLVAPAISE---PLPAHRVR 315 Query: 301 CF 302 C+ Sbjct: 316 CY 317 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 235 bits (599), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/254 (51%), Positives = 166/254 (65%), Gaps = 10/254 (3%) Query: 4 AVRGIDFQVRKGEMLCLVGESGCGKSMTSLALMGLLP----RKAQCSADHILFDGA--DL 57 AVR + F V +GE L +VGESG GKS++SLA+M L+ + A S + G DL Sbjct: 26 AVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRLDL 85 Query: 58 NTMSERQRMQLRGKRMSMIFQEPMTSLNPAYTLGNQLCEAMLQQPGVTRGEARERALYLL 117 +RG ++MIFQEPMTSLNP +T+G Q+ E++ G+ R A+ AL +L Sbjct: 86 AQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAEALRML 145 Query: 118 HRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRM 177 I A+ L ++PHQLSGG+RQRVMIAM+L C P L+IADEPTTALDVTIQAQIL++ Sbjct: 146 EMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQILQL 205 Query: 178 IRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETSGVAQLFAQPRHPYTRGLLN 237 IR LQQE VIFITHD+GVV+ +ADRV VM G+ VE + V LFA P HPYT+ LL Sbjct: 206 IRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQSLLA 265 Query: 238 CIP----VRGKTLP 247 +P +RG P Sbjct: 266 AVPRLGSMRGTDKP 279 Score = 198 bits (504), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 111/252 (44%), Positives = 157/252 (62%), Gaps = 11/252 (4%) Query: 2 LHAVRGIDFQVRKGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNTMS 61 +HAV + F + GE L +VGESGCGKS T +L+ L+ + + F G DL + Sbjct: 336 VHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRLV----DIAGGKVEFGGRDLAQLP 391 Query: 62 ERQRMQLRGKRMSMIFQEPMTSLNPAYTLGNQLCEAMLQQPGVTRGEARERALYLLHRTG 121 + QLR + + IFQ+P SL+P T+G + E ML G+ G A+ER LL R G Sbjct: 392 RSELRQLR-RDIQFIFQDPFASLDPRMTVGYSIMEPMLVH-GMKEG-AQERVDALLTRVG 448 Query: 122 ISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIREL 181 ++ + ++YPH+ SGG RQR+ IA +L +P ++IADE +ALDV+IQAQI+ ++ +L Sbjct: 449 LT--PEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSALDVSIQAQIVNLMLDL 506 Query: 182 QQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETSGVAQLFAQPRHPYTRGLLNCIPV 241 Q E G + IFI+HD+ VV RI+ RVAVMY GQ+VE +F P+HPYTR L+ +PV Sbjct: 507 QAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKLMAAVPV 566 Query: 242 RGKTL--PGSRL 251 TL PG +L Sbjct: 567 ADPTLRQPGKKL 578 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 235 bits (599), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 123/236 (52%), Positives = 161/236 (68%), Gaps = 2/236 (0%) Query: 8 IDFQVRKGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNTMSERQRMQ 67 + F + GE LVGESG GK+++SLA+M L + A+ IL DG D+ SERQ Q Sbjct: 24 VSFAIAPGEKFALVGESGSGKTVSSLAVMQL-NQDARYEGS-ILLDGQDVLAKSERQMQQ 81 Query: 68 LRGKRMSMIFQEPMTSLNPAYTLGNQLCEAMLQQPGVTRGEARERALYLLHRTGISNAED 127 +RG ++MIFQEPMT+LNP +T+GNQ+ E ++ G+ +A RA+ LL +TGI Sbjct: 82 VRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTGIPEPAR 141 Query: 128 RLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIRELQQEFGT 187 R YPH+LSGG RQR MIAM+L C P L+IADEPTTALDVTIQ QIL ++ +LQ+E Sbjct: 142 RALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQILALLNQLQREENM 201 Query: 188 AVIFITHDLGVVSRIADRVAVMYAGQVVETSGVAQLFAQPRHPYTRGLLNCIPVRG 243 AV+ I+HDL +V ADRV VM G++VE++ VA+LFA P+ PYTR LL P R Sbjct: 202 AVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQPYTRKLLQSRPQRN 257 Score = 172 bits (437), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/236 (43%), Positives = 148/236 (62%), Gaps = 7/236 (2%) Query: 2 LHAVRGIDFQVRKGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNTMS 61 HAV G+D Q+R+GE L +VGESG GKS +AL+ L A A I FDG ++ Sbjct: 290 FHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRL---SAASVAGSIRFDGVPISERP 346 Query: 62 ERQRMQLRGKRMSMIFQEPMTSLNPAYTLGNQLCEAM-LQQPGVTRGEARERALYLLHRT 120 +R+ LR RM ++FQ+P SL+P T+ + E + L P + + R+ + L Sbjct: 347 QRELRPLRS-RMQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQRQAIVAALEEV 405 Query: 121 GISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIRE 180 G+S A L +YPH+ SGG RQR+ IA +L+ P+L++ DEPT+ALDVT+Q Q+L+++ E Sbjct: 406 GLSAAV--LERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQQVLQLLAE 463 Query: 181 LQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETSGVAQLFAQPRHPYTRGLL 236 LQ+ G A +FITHDL VV +A +V VM G+VVE+ AQ+ QP+ YTR L+ Sbjct: 464 LQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYTRRLV 519 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 207 bits (528), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 124/306 (40%), Positives = 174/306 (56%), Gaps = 14/306 (4%) Query: 1 MLHAVRGIDFQVRKGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSADHILFDGADLNTM 60 + HA+ +D +V GE++ LVGESGCGKS GLL S +L +G D ++ Sbjct: 41 ITHALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLL----DPSDGQVLVNGRDRASL 96 Query: 61 SERQRMQLRGKRMSMIFQEPMTSLNPAYTLGNQLCEAMLQQPGVTRGEARERALYLLHRT 120 S R+ + R ++ MIFQ P SLNP + + EA Q G G+ + L R Sbjct: 97 SSREEAEAR-LQVQMIFQNPYASLNPRLRIDQIVGEAA-QVNGKVEGDLDDYVCQQLLRA 154 Query: 121 GISNA-EDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALDVTIQAQILRMIR 179 G+ A DR YPHQ SGG RQR+ IA +L P +++ DE ALDV+IQAQIL + Sbjct: 155 GLDPALRDR---YPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFM 211 Query: 180 ELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETSGVAQLFAQPRHPYTRGLLNCI 239 +L+ E G +FI+HDLGVV ++DRV +MY G+VVE++ VA+LF QP HPYT+ LL + Sbjct: 212 DLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEV 271 Query: 240 PVRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCTLADSGCEQDPPMVQQGSPGLPHEA 299 P G AI G +PS + +GC F RC A C ++ P++++ +PG H + Sbjct: 272 PRMGAR--KKEFTAIKGEIPSPLNPPTGCHFNPRCPHATQRCREEQPLLREIAPG--HMS 327 Query: 300 RCFKLD 305 C D Sbjct: 328 ACHLND 333 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 974,373 Number of extensions: 39603 Number of successful extensions: 457 Number of sequences better than 1.0e-08: 116 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 128 Length of query: 315 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 230 Effective length of database: 1,217,395 Effective search space: 280000850 Effective search space used: 280000850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)