BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0525.p (512 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter perip... 983 0.0 gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 144 1e-35 gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip... 127 3e-30 gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter perip... 69 1e-12 gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter perip... 65 1e-11 >gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/512 (95%), Positives = 501/512 (97%) Query: 1 MNALPKSLMRWSRCAVFVAGAMSAMAAHAGKANDTLIYASDSEVENISQYHNNLREGVIL 60 MNAL KSL+ WSRCAV AGAM+A+AAHAGKANDTL+YASDSEVENISQYHNNLREGVIL Sbjct: 1 MNALHKSLLGWSRCAVLAAGAMTAVAAHAGKANDTLVYASDSEVENISQYHNNLREGVIL 60 Query: 61 AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN 120 AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN Sbjct: 61 AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN 120 Query: 121 YAVSAESKAVTRQNTDWIKSVDKLGDYQVRINLKGPFPAALEYLAGPLPIYPAAYFKKVG 180 YAVS ESKAVTRQNTDWIKSVDKL DY+VRINLKGPFPAALEYLAGPLPIYPAAYFKKVG Sbjct: 121 YAVSPESKAVTRQNTDWIKSVDKLADYKVRINLKGPFPAALEYLAGPLPIYPAAYFKKVG 180 Query: 181 LEGFSKAPIGTGPYKVTSVTPGQGVTLVKNGNYFKDSPQGQPSIGNIKFVVIPDPETRAA 240 LEGFSKAPIGTGPYKVTSVTPGQGVTLVKN YFKDSPQGQP+IGNIKFVVIPDPETRAA Sbjct: 181 LEGFSKAPIGTGPYKVTSVTPGQGVTLVKNPGYFKDSPQGQPTIGNIKFVVIPDPETRAA 240 Query: 241 QLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGFITLDATGTSAPNSPFKDVRVR 300 QLMTGAIDWIWRVPPDQADSLKTNPKL VQSGETMR+GFITLD TGTSAPNSPFKDVRVR Sbjct: 241 QLMTGAIDWIWRVPPDQADSLKTNPKLAVQSGETMRIGFITLDTTGTSAPNSPFKDVRVR 300 Query: 301 QAVNHAINRKGYAENLMRGGSQPVYTACFRTQFGCDSNAAIKFDYNPAKAKELLAAAGYP 360 QAVNHAINRKGYA+NLMRGGSQPVYTACFRTQFGCDSNAAIK+DYNPAKAKELLAAAGYP Sbjct: 301 QAVNHAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYDYNPAKAKELLAAAGYP 360 Query: 361 NGFDTDIYAYREREVAEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS 420 NGFDTDIYAYRERE+AEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS Sbjct: 361 NGFDTDIYAYREREIAEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS 420 Query: 421 MNDTSAFAGVYFKGGADDITKDPQLQQFLQTADTSIDPAVRKANYTKAQELISKQAYVAP 480 MNDTSAFAGVYFKGGADDITKDPQLQQ+LQTADTSIDPAVRKANY+KAQELISKQAYVAP Sbjct: 421 MNDTSAFAGVYFKGGADDITKDPQLQQYLQTADTSIDPAVRKANYSKAQELISKQAYVAP 480 Query: 481 MFSYSTFYAFNAQLKFQGYPDELPRFYEASWK 512 MFSYST+YA+NAQL FQGYPDELPRFYEASWK Sbjct: 481 MFSYSTYYAYNAQLNFQGYPDELPRFYEASWK 512 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 129/482 (26%), Positives = 215/482 (44%), Gaps = 52/482 (10%) Query: 49 QYHNNLREGVILAHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGD 108 Q +N+ + + H WD L+ D N+ P LA +WK P LR V++Q+G Sbjct: 45 QLNNHAGDRSVDLHF-WDLLVQND--YNKLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGK 101 Query: 109 KFSADDVVFTFNYAVSAESKAVT----RQNTDWIKSVDKLGDYQVRINLKGP-FPAALEY 163 F+ADDV+F++ A + T + + + + D L ++ N+ P P L Sbjct: 102 PFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPL-TLVIKTNIPNPDLPLNL-- 158 Query: 164 LAGPLPIYPAAYFKKVGLEGFSK--APIGTGPYKVTSVTPGQGVTLVKNGNYFKDSPQGQ 221 + I +K E ++ A IGTGPYK S TPG V + +N +Y+ G+ Sbjct: 159 --ASVHIVSKHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRVVMQRNDDYW----NGK 212 Query: 222 PSIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGFI- 280 P + + I + R A L++G +D I +V LK +P + V +RV I Sbjct: 213 PLWEKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQ 272 Query: 281 ----------TLDATGTSAPNSPFKDVRVRQAVNHAINRKGYAENLMRGGSQPVYTACFR 330 D G +P DVRVR+A++ AINRK + +++G + Sbjct: 273 PSFHQGPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQWMPA 332 Query: 331 TQFGCDSNAAIK-FDYNPAKAKELLAAAGYPNGFDTDIYAYRER-----EVAEAIIGDLR 384 FG N IK ++ A+AK+LLA AG+P+GF I+ +R E +A+ Sbjct: 333 DTFGY--NPEIKNIPFDAAQAKKLLADAGFPDGFKLTIHVPNDRYPQAPETMQAVAQFWT 390 Query: 385 KVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFSMNDTSAFAGVYFKGGADDITK--- 441 ++GI+ ++ + +AA + + +S +WG+ + + A V G+ D K Sbjct: 391 RIGIKTQVEVLPWAAYSSRANKNEFAVSVLAWGNGTGEASYALVNVL---GSVDPKKGIG 447 Query: 442 --------DPQLQQFLQTADTSIDPAVRKANYTKAQELISKQAYVAPMFSYSTFYAFNAQ 493 P + + L + D A R+A A + +S++ V P++ Y +A Sbjct: 448 ASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTVSEEVGVIPLYHYQNIWAAKKG 507 Query: 494 LK 495 LK Sbjct: 508 LK 509 >gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/308 (29%), Positives = 157/308 (50%), Gaps = 19/308 (6%) Query: 96 LDLRQGVQFQNGDKFSADDVVFTFNYAVSAESKAVTRQNTDWIKSVDKLGDYQVRINLKG 155 + L+QGV+FQ+G F AD V F+ + ++K + I + L DY V++ LK Sbjct: 98 IRLKQGVKFQDGTVFKADAVKAVFDRVTNPDNKLKRYNLFNRIAKTEILNDYTVKVVLKE 157 Query: 156 PFPAALEYLAGP--LPIYPAAYFKKVGLEGFSKAPIGTGPYKVTSVTPGQGVTLVKNGNY 213 PF A + LA P + I P A K+ G + + P+GTGP+K V + K Y Sbjct: 158 PFSAFINVLAHPSAVMISPTA-LKQYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGY 216 Query: 214 FKDSPQGQPSIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGE 273 +K G P + I + + D R+A + TG + + +P +QAD LK+ L V + Sbjct: 217 WK---PGYPKVDEIIWKPVVDNNARSAMMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAP 273 Query: 274 TMRVGFITLDATGTSAPNSPFKDVRVRQAVNHAINRKGYAENLMRGGSQPVYTACFRTQF 333 ++ +++++ PF + +VR+A+N+AIN++ + G + P+ + Sbjct: 274 SIIQRYMSMNTK-----QKPFDNPKVREAINYAINKQALVKVAFNGYAVPMDGVVPQ--- 325 Query: 334 GCD-SNAAIKFDYNPAKAKELLAAAGYPNGFDTDIYAYREREVAEAII----GDLRKVGI 388 G D + + Y+ KAK LLA AGYPNGF+T++++ A I+ L +VGI Sbjct: 326 GVDYAYKTGPWPYDVKKAKALLAEAGYPNGFETELWSAYTHSTAVKIVQFLQQQLAQVGI 385 Query: 389 RARLHYMK 396 +A++ ++ Sbjct: 386 KAKIQALE 393 >gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 95/433 (21%), Positives = 179/433 (41%), Gaps = 75/433 (17%) Query: 19 AGAMSAMAAHAGKANDTLIYASDSEVENISQYHNNLREGVILAHL-IWDTLIYRDPKTNE 77 AG AHAGK D L E+ + + R G + A + + +TL+ D + Sbjct: 40 AGHAHGDIAHAGK--DMLTVVGPWELTGL----DPTRSGYMFARMEVLETLLEVD-DAGQ 92 Query: 78 YKPQLATAW-------KWESPTALVLDLRQGVQFQNGDKFSADDVVFTFNYAVSAESKAV 130 +P +A+AW +W LR G+++ +G + ++ A+++ Sbjct: 93 LQPSVASAWSVSADGLQWR------FVLRSGLRYHDGSALTPASILACLQ---RAQARPG 143 Query: 131 TRQNTDWIKSVDKLGDYQVRINLKGPFPAALEYLAGPLPIYPAAYFKKV------GLEGF 184 + D I ++ G V + L+ PF GPLP Y ++ +G Sbjct: 144 VLRLAD-IAALRVEGQTLV-VVLRRPF--------GPLPYLLTHYTTQILAPASFDAQGN 193 Query: 185 SKAPIGTGPYKVTSVTPGQGVTLVKNGNYFKDSPQGQPSIGNI----KFVVIPDPETRAA 240 A IG+GP+++ S+ Q V+ +G + +++ + ETR Sbjct: 194 VVAIIGSGPFRIRSIALPQQFE-VERVAGSVSGSGAGSDVGKVVQRARYISVSRAETRTL 252 Query: 241 QLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGFITLDATGTSAPNSPFKDVRVR 300 + +G D + + P +L+ +P+ ++ S R + L+A + DVRVR Sbjct: 253 LVQSGQADLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAG-----HPLLADVRVR 307 Query: 301 QAVNHAINRKGYAENLMR----GGSQPVYTACFRTQFGCDSNAAIK-FDYNPAKAKELLA 355 +A++ I R+G A L+R G +Q F +AA+ N +A+ LL Sbjct: 308 RAISLCIEREGIARALLRDPDLGATQ-----LFPPSLARWHDAALAPLRTNLQQARSLLD 362 Query: 356 AAGYPNGFD-----------TDIYAYRERE----VAEAIIGDLRKVGIRARLHYMKFAAL 400 AG+ G D ++ + +R +A A+ ++R++G+ R+ + + Sbjct: 363 QAGWRPGSDGVRRRDGQRMALNLTTFVDRPELPLIATALQEEMRQIGMAVRVVIGNSSDI 422 Query: 401 QTEYRSGKTPMSF 413 +RSG+ M+ Sbjct: 423 PAGHRSGQLQMAL 435 >gi|300310463|ref|YP_003774555.1| dipeptide ABC transporter periplasmic peptide-binding protein [Herbaspirillum seropedicae SmR1] Length = 540 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 20/213 (9%) Query: 62 HLIWDTLIYRDPKTNEYKPQLATAWKWESPTALV--LDLRQGVQFQNGDKFSADDVVFTF 119 H+ ++ L D K PQ+ A + + A+ + LR+GV F +G + DVV++ Sbjct: 96 HMFYNGLTKLDGKLG---PQMVLAEEMLTNDAVTWTVKLRKGVNFHDGKPLTPADVVYSI 152 Query: 120 NYAVSAESKAVTRQNTDWIKSVDKLGDYQVRINLKGPFPAALEYLAGPLPIYPAA---YF 176 + + + D +SV G +V+I L LP+ A Sbjct: 153 MRHKDPATASKVKVVADQFESVKATGPNEVQIKLTSA--------NADLPVILATAQFLI 204 Query: 177 KKVGLEGFSKAPIGTGPYKVTSVTPGQGVTLVKNGNYFKDSPQGQPSIGNIKFVVIPDPE 236 + G FS P GTG +K+ TPG V+N NY+K G P + ++ IPD Sbjct: 205 IRDGTTNFS-TPNGTGAFKLKEFTPGVRTIGVRNENYWK---PGLPYLDEVELFGIPDEA 260 Query: 237 TRAAQLMTGAIDWIWRVPPDQADSLKTNPKLTV 269 R L++G + WI V +K P TV Sbjct: 261 ARVNALLSGDVHWINDVNSRSTGRVKNTPGYTV 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,618,250 Number of extensions: 68402 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 5 Length of query: 512 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 423 Effective length of database: 1,198,455 Effective search space: 506946465 Effective search space used: 506946465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)