BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0518.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312488|ref|YP_003776580.1| transcription regulator protein...   261   3e-71

>gi|300312488|ref|YP_003776580.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score =  261 bits (666), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/173 (76%), Positives = 148/173 (85%), Gaps = 4/173 (2%)

Query: 1   MSTGFTNDDSSSAAEALRDFYIRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLA 60
           MST FT+D  ++AA+ALRDFY+RSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLA
Sbjct: 1   MSTPFTSD-HTAAADALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLA 59

Query: 61  TAFGFAPRTITEAIDALERDGLVQRNGDTTDRRVKYIALTASGKEVLRASEPVKKTFIDG 120
           TAFGFAPRTITEAIDALERDGLVQR GD +DRRVK+IALTA+G+EVLRASEPVKK+FIDG
Sbjct: 60  TAFGFAPRTITEAIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDG 119

Query: 121 LFAALSEEEIGALTTVLGKLNHRLAELEEVYSSNAPVPAAATDELPAKRSRKK 173
           LF AL  +E+  LT VLGKLN RLAELEE Y +      A T+  P KR R+K
Sbjct: 120 LFTALDADEVHTLTQVLGKLNVRLAELEEAYCAKGE---AGTEAAPGKRGRRK 169


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 513,035
Number of extensions: 19603
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)