BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0507.p
         (495 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin t...   904   0.0  

>gi|300312498|ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/490 (89%), Positives = 457/490 (93%), Gaps = 5/490 (1%)

Query: 6   MTPRQGKEGDPQPEAGTQQELPTKEGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVF 65
           M PRQ KEGDP P+ G      +K GKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVF
Sbjct: 1   MKPRQDKEGDPPPDTGD-----SKTGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVF 55

Query: 66  LTQLVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTA 125
           LTQLVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTA
Sbjct: 56  LTQLVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTA 115

Query: 126 IAGRVWCGYACPQTVYTEIFLWIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGGL 185
           +AGRVWCGY+CPQTVYTEIF+WIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWG +
Sbjct: 116 VAGRVWCGYSCPQTVYTEIFMWIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGAV 175

Query: 186 ALWTGISFVGYFSPIRELLPEIGQFALGPWESFWIVFYAFATYGNAGWMREQVCKYMCPY 245
           ALWTGISFVGYFSPIR+LLPEI  FALGPWESFWI+FY FATYGNAGWMREQVCKYMCPY
Sbjct: 176 ALWTGISFVGYFSPIRDLLPEISGFALGPWESFWILFYGFATYGNAGWMREQVCKYMCPY 235

Query: 246 ARFQSAMFDRDSLVITYDNARGEPRMPAAKAAKLQEGRKAGDCIDCTMCVQVCPTGIDIR 305
           ARFQSAMFDRDSL+ITYD ARGEPRMPAAKAAKL  G +AGDCIDCTMCVQVCPTGIDIR
Sbjct: 236 ARFQSAMFDRDSLIITYDVARGEPRMPAAKAAKLDTGARAGDCIDCTMCVQVCPTGIDIR 295

Query: 306 QGLQYMCIGCAACVDACDSVMDKIDRPRGLIRYSTENAIEQGFSTPEIRRRLFRPRILIY 365
           QGLQYMCIGCAACVDACDSVMDKI RPRGLIRYSTENA+EQGFST EIRRRL RPRILIY
Sbjct: 296 QGLQYMCIGCAACVDACDSVMDKIKRPRGLIRYSTENAVEQGFSTAEIRRRLVRPRILIY 355

Query: 366 TAILGAVIALFLGSLVVRTPLKLDVIRDRGSMGREVEDGIIENVYRLQVINTDERGHRYR 425
            AILGAVIALF GSL VRTPLKLDVIRDRGSMGREVE+GIIENVYRLQ+INTDERGHRY 
Sbjct: 356 GAILGAVIALFAGSLWVRTPLKLDVIRDRGSMGREVEEGIIENVYRLQIINTDERGHRYL 415

Query: 426 ISASGIEGLTVDPAGPIELAATQTLMVPVRVRAPHGAGESGSNKIHIELQAEDQPALHVS 485
           + A G+ GL+VDPA PIE+AATQT+ VPVRVRAPHGAGE GSNKI IEL+AEDQPAL+VS
Sbjct: 416 VRAKGLAGLSVDPATPIEVAATQTVSVPVRVRAPHGAGEVGSNKIRIELEAEDQPALNVS 475

Query: 486 EKAVFLVPRR 495
           EKAVFLVPRR
Sbjct: 476 EKAVFLVPRR 485


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,591,926
Number of extensions: 67528
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 406
Effective length of database: 1,198,455
Effective search space: 486572730
Effective search space used: 486572730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)