BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0501.p (391 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ... 567 e-163 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 191 8e-50 gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 148 9e-37 gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase ... 140 2e-34 gi|300313072|ref|YP_003777164.1| high-affinity K+ transport syst... 80 3e-16 >gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 839 Score = 567 bits (1461), Expect = e-163, Method: Compositional matrix adjust. Identities = 307/381 (80%), Positives = 333/381 (87%) Query: 1 VASRFVVALLLLAAITFIAWHLIDPARAWATAIAVLVVSCPCALSLATPSALAAATDRLL 60 VASRFVVALLLLA TF+AW LIDP RAW+TAIAVLVVSCPCALSLATPSALAAATDRLL Sbjct: 437 VASRFVVALLLLAGATFLAWQLIDPTRAWSTAIAVLVVSCPCALSLATPSALAAATDRLL 496 Query: 61 REGTLVVRGNVLETLQRADTILFDKTGTLTQGRPQMTALWSCIPQAQALSVAAAMERGSL 120 R GTL+VRGNVLETLQRADTI+FDKTGTLTQGRPQ+TALWS + ++L++AAAMERGSL Sbjct: 497 RAGTLIVRGNVLETLQRADTIVFDKTGTLTQGRPQLTALWSDVDCQRSLAIAAAMERGSL 556 Query: 121 HPLAKALVEEADRRGSAACDVAELGSVTGAGMHCVIDGVPHRLGARHFVAEIAGESMPAE 180 HPLAKALVEE RR A +V +L SVTGAGM +I+G +R+G+R FVA +AG ++P Sbjct: 557 HPLAKALVEEGARRQVDALEVEQLTSVTGAGMQGMIEGDLYRIGSRSFVAGLAGTALPPV 616 Query: 181 LNQPAAAAAGSVYLGNSHGWLARFDLADALRADAVDTVAAFRAQGLRVILLSGDQPEVCA 240 L Q AA+ AGSVYLG+S GWLARFDLADALR DAV TVAAFRA GLR ILLSGDQPEVCA Sbjct: 617 LLQSAASGAGSVYLGSSDGWLARFDLADALRTDAVATVAAFRALGLRTILLSGDQPEVCA 676 Query: 241 EVAAAVGIDEVIAGCTPQRKLEVVRQLQQGGAVVAIVGDGINDAAMLRAGDVSFAMGKGA 300 EVAAA GI EV A CTPQ KL+ VR LQ+ GAVVAIVGDGINDAAMLRAGDVSFAMGKGA Sbjct: 677 EVAAAAGISEVQAACTPQGKLDYVRNLQRDGAVVAIVGDGINDAAMLRAGDVSFAMGKGA 736 Query: 301 ALAQVSADAVIMSDRLSAVAQCAQMARRTMRIVRQNLVWASVYNFLAIPAAAFGLLDPWM 360 ALAQVSADAVIMSDRL AVA CA MA+RTM IVRQNLVWA+ YNFLAIPAAAFGLLDPWM Sbjct: 737 ALAQVSADAVIMSDRLQAVADCAAMAQRTMHIVRQNLVWAATYNFLAIPAAAFGLLDPWM 796 Query: 361 SAVGMSASSLLVVGNALRLSR 381 SAVGMS SSLLVVGNALRLSR Sbjct: 797 SAVGMSLSSLLVVGNALRLSR 817 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 191 bits (485), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 196/368 (53%), Gaps = 25/368 (6%) Query: 31 TAIAVLVVSCPCALSLATPSALAAATDRLLREGTLVVRGNVLETLQRADTILFDKTGTLT 90 A+AV+V++CPCAL LATP+A+ A T R G L+ LE R + + FDKTGTLT Sbjct: 374 NAVAVMVIACPCALGLATPTAIMAGTGVAARHGILIKDAEALEIAHRVNAVAFDKTGTLT 433 Query: 91 QGRPQMTALWSCIPQAQ---ALSVAAAMERGSLHPLAKALVEEADRRGSAACDVAELGSV 147 G P++ L P Q L++AAA++ S HPL +A+ E A + AA ++ SV Sbjct: 434 LGHPRLLEL-EATPSTQPDELLALAAALQAHSEHPLGRAVREAAAQSAQAARQAEQVRSV 492 Query: 148 TGAGMHCVIDGVPHRLGARHFVAEIAGESMPAELNQPAAAAAGSVYL--GNSHGWLARFD 205 G G+ V++G LG+ ++ ++ + + PA A G + WLAR + Sbjct: 493 AGLGIEGVVEGRQLMLGSSRWMQQL-------QAHAPALQARAEQLQAQGRTLSWLARRN 545 Query: 206 -----------LADALRADAVDTVAAFRAQGLRVILLSGDQPEVCAEVAAAVGIDEVIAG 254 D ++ A +A G+R +LSGD +VA+ +GI EV A Sbjct: 546 DSGVEVLGLLAFGDQIKPGAQAAIATLHRMGVRSAMLSGDNLGAAQQVASELGIQEVRAE 605 Query: 255 CTPQRKLEVVRQLQQGGA-VVAIVGDGINDAAMLRAGDVSFAMGKGAALAQVSADAVIMS 313 P K E V L+QGGA VVA+VGDG+NDA L A DV AM G +A +A +M Sbjct: 606 VLPADKAEAVTALRQGGAQVVAMVGDGVNDAPALAAADVGMAMSTGTDVAMQAAGVTLMH 665 Query: 314 DRLSAVAQCAQMARRTMRIVRQNLVWASVYNFLAIPAAAFGLLDPWMSAVGMSASSLLVV 373 VA ++RRT +RQNL WA +YN + IP AA GLL+P ++ M+ SS+ VV Sbjct: 666 GDPGLVADAIDISRRTYAKIRQNLFWAFIYNLVGIPLAALGLLNPMLAGAAMAFSSVSVV 725 Query: 374 GNALRLSR 381 NAL L R Sbjct: 726 SNALLLRR 733 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 148 bits (373), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 21/367 (5%) Query: 32 AIAVLVVSCPCALSLATPSALAAATDRLLREGTLVVRGNVLETLQRADTILFDKTGTLTQ 91 A+ +LV++CPCAL ++TP + + R G LV G LE ++ + DKTGTLT Sbjct: 415 ALVLLVIACPCALVISTPVTIVSGLASAARHGILVKGGVYLEQGRQLRALALDKTGTLTF 474 Query: 92 GRPQMTALWSCIPQAQA-----LSVAAAMERGSLHPLAKALVEEADRRGSAACDVAELGS 146 G+P++T + S QAQA L +A ++ S HP+++A+ + + A +V+E + Sbjct: 475 GKPRVTDVVSL--QAQADQQALLQLAVSLAARSDHPVSRAIAAQEE---IATVEVSEFAA 529 Query: 147 VTGAGMHCVIDGVPHRLGARHFVAEIAGESMPAELNQPAAAAAGSVYL-----GNSHGWL 201 + G G+ I+G LG V E+ S E A G G + Sbjct: 530 LAGRGVQGRINGQLLHLGNHRLVHELGQCSPELEARLQAFEKQGKTTTVLCLDGQPQLLV 589 Query: 202 ARFDLADALRADAVDTVAAFRAQGLRVILLSGDQPEVCAEVAAAVGIDEVIAGCTPQRKL 261 A +AD +R + VA RA G+ VI+L+GD +AA GI + P+ KL Sbjct: 590 A---VADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGISDARGDQLPEDKL 646 Query: 262 EVVRQLQQGGAV--VAIVGDGINDAAMLRAGDVSFAMG-KGAALAQVSADAVIMSDRLSA 318 + + +L Q V V +VGDGINDA L D+ FAMG G A +AD +M D L Sbjct: 647 KAIEELSQRHGVRGVGMVGDGINDAPALARADIGFAMGAAGTDTALETADVALMDDDLRK 706 Query: 319 VAQCAQMARRTMRIVRQNLVWASVYNFLAIPAAAFGLLDPWMSAVGMSASSLLVVGNALR 378 + +++R+ ++ QN+ A + + A G+ WM+ +SL+VV N LR Sbjct: 707 IPDFIRLSRKAHAVLVQNISIALGIKAVFLGLALVGMSSLWMAVFADMGASLIVVFNGLR 766 Query: 379 LSRAXKK 385 L R ++ Sbjct: 767 LVRGLRQ 773 >gi|300311699|ref|YP_003775791.1| cation transport P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 734 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 132/393 (33%), Positives = 203/393 (51%), Gaps = 25/393 (6%) Query: 1 VASRFVVALL-LLAAITFIAWHLI-DPARAWATAIAVLVVSCPCALSLATPSALAAATDR 58 +A R+ + + L+ A+ ++W L DP RA +AV+VV+ PC L LA P A+ A R Sbjct: 199 MADRYALLFIPLVLAMAALSWLLTGDPRRA----LAVVVVATPCPLILAVPVAIVCAMSR 254 Query: 59 LLREGTLVVRGNVLETLQRADTILFDKTGTLTQGRPQMTALWSCIPQAQA---LSVAAAM 115 + G L+ G LE L + T+ FDKTGTLT G+ ++ + + P QA L +AA++ Sbjct: 255 CAQRGVLIKHGGALEKLAQVRTLFFDKTGTLTAGKARLMNMVTT-PSIQADELLRLAASL 313 Query: 116 ERGSLHPLAKALVEEADRRGSAACDVAELGSVTGAGMHCVIDGVPHRLGARHFVAEIAGE 175 E+ S H +A+A+V A R ++ GAG+ +DG R+GA +V I Sbjct: 314 EQMSNHVIAQAVVSAAIERALVLSIPDQVQEQPGAGLSGRVDGKLVRVGAMQYV--IGPS 371 Query: 176 SMPA-------ELNQPAAAAAGSVYLGNSHGWLARFDLADALRADAVDTVAAFRAQG-LR 227 + P L A G G L LAD +R D + RA G R Sbjct: 372 AAPPWTSGLRDRLKYEGGAGVCVAVDGQLCGVLY---LADDIRLDTPRALRQLRALGAKR 428 Query: 228 VILLSGDQPEVCAEVAAAVGIDEVIAGCTPQRKLEVVRQLQQGGAVVAIVGDGINDAAML 287 +++L+GD+ +V + +++G D+V+ +P KL ++Q + G V +VGDGINDA L Sbjct: 429 IVMLTGDRRDVAMTIGSSLGFDDVMPEQSPASKLAAIKQASREG-VTMMVGDGINDAPAL 487 Query: 288 RAGDV-SFAMGKGAALAQVSADAVIMSDRLSAVAQCAQMARRTMRIVRQNLVWASVYNFL 346 A D+ +GAA A SA V++ DRL +A +MA++ +I Q++V + Sbjct: 488 AAADIGVAMGARGAAAAAESAQVVLLVDRLDRLAFAVRMAQQARKIALQSVVAGMGLSGC 547 Query: 347 AIPAAAFGLLDPWMSAVGMSASSLLVVGNALRL 379 A+ AAAFG L P A+ + V+ NALR+ Sbjct: 548 AMLAAAFGYLPPVAGAILQEFIDVAVILNALRV 580 >gi|300313072|ref|YP_003777164.1| high-affinity K+ transport system ATPase [Herbaspirillum seropedicae SmR1] Length = 730 Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 89/356 (25%), Positives = 153/356 (42%), Gaps = 36/356 (10%) Query: 33 IAVLVVSCPCALSLATPSALAAATDRLLREGTLVVRGNVLETLQRADTILFDKTGTLTQG 92 IA+LV P + + A R+++ + G +E D +L DKTGT+T G Sbjct: 292 IALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIATSGRAVEAAGDVDVLLLDKTGTITLG 351 Query: 93 RPQMTALWSCIPQAQALSVAAAMERGSL---HPLAKALVEEADRRGS-AACDVAELGS-V 147 Q A P +A + SL P +++V A R + ++A LG+ Sbjct: 352 NRQAAAFMPA-PGVTERELADVAQLASLADETPEGRSIVVLAKNRFNLREREMANLGAEF 410 Query: 148 TGAGMHCVIDGVP--HR---LGARHFVAEI---AGESMPAELNQPAA------------- 186 + G+ HR GA + ++ A + +PA++ Sbjct: 411 IPFSAQTRVSGIDLGHRRIRKGAADAIRKLTRAADQRLPAQVESDIESIARRGGTPLVVI 470 Query: 187 ---AAAGSVYLGNSHGWLARFDLADALRADAVDTVAAFRAQGLRVILLSGDQPEVCAEVA 243 A A + G L +L D ++ + R G++ ++++GD A +A Sbjct: 471 EWHAEAAMINQGAPIRILGTVELKDIVKGGIKERFGELRRMGIKTVMITGDNRLTAAAIA 530 Query: 244 AAVGIDEVIAGCTPQRKLEVVRQLQQGGAVVAIVGDGINDAAMLRAGDVSFAMGKGAALA 303 A G+D+ +A TP++KL ++RQ Q G +VA+ GDG NDA L DV+ AM G A Sbjct: 531 AEAGVDDFLAEATPEQKLALIRQHQAEGKLVAMTGDGTNDAPALAQADVAVAMNSGTQAA 590 Query: 304 QVSADAVIMSDRLSAVAQCAQMARRTMRIVRQNLVWASVYN-----FLAIPAAAFG 354 + + + V + + + + ++ ++ M + R +L S+ N F IPA G Sbjct: 591 KEAGNMVDLDSNPTKLIEIVEIGKQ-MLMTRGSLTTFSIANDVAKYFAIIPAMFVG 645 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 990,345 Number of extensions: 34960 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 7 Length of query: 391 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 304 Effective length of database: 1,207,925 Effective search space: 367209200 Effective search space used: 367209200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)