BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0500.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ...   353   7e-99
gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ...    97   1e-21

>gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 839

 Score =  353 bits (906), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 190/211 (90%), Positives = 197/211 (93%)

Query: 1   MMQVMMYAIPVYMTHEGIDPDMMALMRWASLFLTIPAVFYSALPFFTGAWAGLRARAPGM 60
           MMQVMMYA+PVYMTHEGIDPDMM+LMRWASLFLTIPAVFYSALPFFTGAWAGLRARAPGM
Sbjct: 196 MMQVMMYAVPVYMTHEGIDPDMMSLMRWASLFLTIPAVFYSALPFFTGAWAGLRARAPGM 255

Query: 61  DLPVAIGIAAAFTGSAIATWRGEGEIWFDSVSMFIFLLLASRYLETAARRKSAAALERMQ 120
           DLPVAIGIAAAF  SAIATWRGEGEIWFDSVSMFIFLLL SRYLE AARRKSA+ALERMQ
Sbjct: 256 DLPVAIGIAAAFLASAIATWRGEGEIWFDSVSMFIFLLLGSRYLEAAARRKSASALERMQ 315

Query: 121 QAFPASALVLRGYPLQRETTLVAASQLQAGDVILARPGDTIAADACLLEGVAELDLALLS 180
           QAFPASAL+  GYP QRETTLV A+QL+ GDVILARPGDTIAADACLLEG  E DLALLS
Sbjct: 316 QAFPASALLAPGYPEQRETTLVVAAQLREGDVILARPGDTIAADACLLEGAGEFDLALLS 375

Query: 181 GESRPQAFQPGQEAPGGAVNLSQPVLLRVVR 211
           GESRPQ+FQ GQEAPGGAVNLSQPV LRVVR
Sbjct: 376 GESRPQSFQIGQEAPGGAVNLSQPVFLRVVR 406


>gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 744

 Score = 97.1 bits (240), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 28/224 (12%)

Query: 9   IPVYMTHEGIDPDMMALMRWASLFLTIPAVFYSALPFFTGAWAGLRARAPGMDLPVAIGI 68
           +P+ +   G+   +  L +W    L  P  F+    F+   W  LRAR+  MDL VA+G 
Sbjct: 107 LPMLLAPLGVHWSLPPLWQW---LLATPVQFWLGWRFYHAGWGALRARSGNMDLLVALGT 163

Query: 69  AAAFTGS-----AIATWRGEG----EIWFDSVSMFIFLLLASRYLETAARRKSAAALERM 119
           +AA+  S      + T  G       ++F+S ++ I L+L  ++LE  A+R++A A+  +
Sbjct: 164 SAAYGLSLWQWLTLPTMPGHAMAMPHLYFESSAVVITLVLLGKWLEGRAKRQTADAIAAL 223

Query: 120 QQAFPASALVLRGYPLQRETTLVAASQLQAGDVILARPGDTIAADACLLEGVAELDLALL 179
               P +A V R      +   V  +Q++ GD+++ RPG+ +  D  + EG + LD A+L
Sbjct: 224 NALRPENARVRR----DGQDIEVPLAQVRVGDLVVLRPGERVPVDGVVREGRSHLDEAML 279

Query: 180 SGESRPQAFQPGQEAPGGAVNL------------SQPVLLRVVR 211
           +GESRPQA Q G     G++N             ++ VL R+VR
Sbjct: 280 TGESRPQAKQAGDPLTAGSINAEGVLVMETTAIGAETVLARIVR 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 768,342
Number of extensions: 33228
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 129 (54.3 bits)