BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0499.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase ...   204   3e-54

>gi|300312503|ref|YP_003776595.1| cation transport P-type ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 839

 Score =  204 bits (519), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 123/139 (88%), Gaps = 2/139 (1%)

Query: 1   VGCQSVARLIVESGCEDFYLRRTVPSARIDPEHLLPPELALVDLPVQTAEGEVSGAGDHA 60
           VGCQSVARLIV+SGCEDFYLRRT PSAR+DPE LLPPELAL++ P Q A  +   A D +
Sbjct: 43  VGCQSVARLIVDSGCEDFYLRRTAPSARVDPEQLLPPELALLEQP-QPAPDQAHAA-DAS 100

Query: 61  QELVLSIDGLRCAACVWLIEKYLARLPGIDMAELNVASARLHIRRDPARCSTSTILRGLH 120
            ELVLSIDGLRC+ACVWLIEKYLARLPG+ MAE+NVA++RLH+RRDPA CST+TILRGL 
Sbjct: 101 AELVLSIDGLRCSACVWLIEKYLARLPGMQMAEMNVATSRLHLRRDPALCSTATILRGLR 160

Query: 121 GLGYTAYPFDPLRQGEQAR 139
           GLGYTAYPFDPLRQGEQAR
Sbjct: 161 GLGYTAYPFDPLRQGEQAR 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 456,785
Number of extensions: 17745
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)