BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0492.p (138 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310024|ref|YP_003774116.1| biopolymer transport ExbD/TolR ... 214 2e-57 gi|300309939|ref|YP_003774031.1| biopolymer transport ExbD/TolR ... 140 3e-35 gi|300312126|ref|YP_003776218.1| biopolymer transport ExbD/TolR ... 114 3e-27 gi|300311921|ref|YP_003776013.1| biopolymer transport ExbD/TolR ... 58 4e-10 gi|300310551|ref|YP_003774643.1| biopolymer transport ExbD/TolR ... 57 5e-10 >gi|300310024|ref|YP_003774116.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 138 Score = 214 bits (546), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 102/135 (75%), Positives = 115/135 (85%) Query: 2 MGMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRATAQPDTLKP 61 M MGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIIT+PVMN+AVKIDLP+A++QPD +KP Sbjct: 1 MAMGSLSDSDDDFNPEINTTPLVDVMLVLLIIFIITIPVMNHAVKIDLPKASSQPDQVKP 60 Query: 62 DSINLAIDADGKTFWNDEPVDQAQLQARIGKAASAPQPPELHLRAARTTPYEKVAQVMAM 121 +SINL+IDA G FWN+E +D +L RI AA PELHLRA RTT YEKVAQVM+ Sbjct: 61 ESINLSIDASGNVFWNEEKIDSGELSVRIAAAAQKQPQPELHLRAERTTQYEKVAQVMSA 120 Query: 122 AQAGGLAKIGFVTDP 136 AQ+GGLAKIGFVTDP Sbjct: 121 AQSGGLAKIGFVTDP 135 >gi|300309939|ref|YP_003774031.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 148 Score = 140 bits (354), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/137 (50%), Positives = 95/137 (69%), Gaps = 1/137 (0%) Query: 2 MGMGSLSDSDDDF-NPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRATAQPDTLK 60 M G +D+ + +IN TP+VDVMLVLL+IFIIT P+ +A+K+DLP A + P K Sbjct: 1 MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSAPAPEK 60 Query: 61 PDSINLAIDADGKTFWNDEPVDQAQLQARIGKAASAPQPPELHLRAARTTPYEKVAQVMA 120 P++I L IDA GK +WND+PV +L AR+ AA PEL LRA ++T Y+ +A+VM+ Sbjct: 61 PETITLGIDAAGKLYWNDQPVSSEELDARLTAAAGKQPQPELQLRADKSTRYQTIAEVMS 120 Query: 121 MAQAGGLAKIGFVTDPR 137 AQ GL+K+GFVTDP+ Sbjct: 121 AAQGAGLSKLGFVTDPK 137 >gi|300312126|ref|YP_003776218.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 139 Score = 114 bits (285), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/125 (50%), Positives = 85/125 (68%) Query: 12 DDFNPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRATAQPDTLKPDSINLAIDAD 71 D EIN TPL+DVMLVLLIIFI+T+P +N AVK+ LP+ATAQP I+++I AD Sbjct: 10 DGLATEINMTPLIDVMLVLLIIFIVTLPAINQAVKVTLPKATAQPTETASKDIDISIQAD 69 Query: 72 GKTFWNDEPVDQAQLQARIGKAASAPQPPELHLRAARTTPYEKVAQVMAMAQAGGLAKIG 131 G WN P + +L+A + AA+A PP +++ A PY VA+V+A QAGGL++I Sbjct: 70 GTVLWNRVPANLDELRAHVVAAAAAAVPPAVNVYADEQVPYGSVAKVLAGVQAGGLSRIN 129 Query: 132 FVTDP 136 FVT+P Sbjct: 130 FVTEP 134 >gi|300311921|ref|YP_003776013.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 132 Score = 57.8 bits (138), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 4/119 (3%) Query: 15 NPEINTTPLVDVMLVLLIIFIITVPVM--NNAVKIDLPRATAQPDTLKPDSINLAIDADG 72 P I P++D+M+ LLI F++T+ M + +KI++P+A A TL S+ + +D G Sbjct: 11 EPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQA-ASAATLPSKSLTIVVDKTG 69 Query: 73 KTFWNDEPVDQAQLQARIGKAASAPQPPELHLRAARTTPYEKVAQVMAMAQAGGLAKIG 131 F+ +P++ L A++ + A + E+ + + E + VM +A+A G+ IG Sbjct: 70 AMFFEGKPLEHDALVAQLKERAQTAK-LEVLVAGDKEVSLENLLHVMDVARAAGIEDIG 127 >gi|300310551|ref|YP_003774643.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 144 Score = 57.0 bits (136), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 17/134 (12%) Query: 14 FNPEINTTPLVDVMLVLLIIFIITVPVMNNAVKIDLPRA--TAQPDTLKPDSINLAI--D 69 F EIN P +DVMLVLLIIF++ P+ N +V I+LP A + QP + D I +A+ + Sbjct: 14 FKSEINVVPYIDVMLVLLIIFMVATPITNPSV-INLPTAGKSTQPPS---DYIEIALKPN 69 Query: 70 ADGKTFWNDEPVDQAQLQARIGKAASAPQPPELH---------LRAARTTPYEKVAQVMA 120 + N + + GK + + +LH + A + Y++V QV++ Sbjct: 70 SQATIRINGPKSGGKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIKYDEVVQVIS 129 Query: 121 MAQAGGLAKIGFVT 134 A+ G+A++G T Sbjct: 130 EAKKQGIARVGLAT 143 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 407,216 Number of extensions: 15079 Number of successful extensions: 63 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 6 Length of query: 138 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 62 Effective length of database: 1,260,010 Effective search space: 78120620 Effective search space used: 78120620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)